1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaactctgcttccgaactcaagtttgttatgagttaatattgtataaacagtcagctattgcggaattctgattagtgaatattctccgctcttcttaagcgcatcattttgtccatacagCCTGCTCACGAGAAAATTGGAGTAGTTGATGAAACATGGATTATACACGTCGGTGTACCATCACTTGGAAATCAG
species | Physcomitrella patens |
transcript | PP1S448_20V6.3 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACTTGGTACACGGTTGGGGTCTGGATTTCGCCATACGTCGCTGTGTTGAG CCTGCTCACGAGAAAATTGGAGTAGTTGATGAAACATGGATTATACACGTCEST: gi|37826494|gb|BJ584506.1|BJ584506
genomic: ACTTGGTACACGGTTGGGGTCTGGATTTCGCCATACGTCGCTGTGTTGAGgtaactctgc ... gtccatacagCCTGCTCACGAGAAAATTGGAGTAGTTGATGAAACATGGATTATACACGTC
EST: ACTTGGTACACGGTTGGGGTCTGGATTTCGCCATACGTCGCTGTGTTGAG CCTGCTCACGAGAAAATTGGAGTAGTTGATGAAACATGGATTATACACGTCEST: gi|162277817|gb|FC454280.1|FC454280
genomic: ACTTGGTACACGGTTGGGGTCTGGATTTCGCCATACGTCGCTGTGTTGAGgtaactctgc ... gtccatacagCCTGCTCACGAGAAAATTGGAGTAGTTGATGAAACATGGATTATACACGTC
EST: ACTTGGTACACGGTTGGGGTCTGGATTTCGCCATACGTCGCTGTGTTGAG CCTGCTCACGAGAAAATTGGAGTAGTTGATGAAACATGGATTATACACGTCEST: gi|162177785|gb|FC354619.1|FC354619
genomic: ACTTGGTACACGGTTGGGGTCTGGATTTCGCCATACGTCGCTGTGTTGAGgtaactctgc ... gtccatacagCCTGCTCACGAGAAAATTGGAGTAGTTGATGAAACATGGATTATACACGTC
EST: ACTTGGTACACGGTTGGGGTCTGGATTTCGCCATACGTCGCTGTGTTGAG CCTGCTCACGAGAAAATTGGAGTAGTTGATGAAACATGGATTATACACGTCEST: gi|37822473|gb|BJ580539.1|BJ580539
genomic: ACTTGGTACACGGTTGGGGTCTGGATTTCGCCATACGTCGCTGTGTTGAGgtaactctgc ... gtccatacagCCTGCTCACGAGAAAATTGGAGTAGTTGATGAAACATGGATTATACACGTC
EST: ACTTGGTACACGGTTGGGGTCTGGATTTCGCCATACGTCGCTGTGTTGAG CCTGCTCACGAGAAAATTGGAGTAGTTGATGAAACATGGATTATACACGTC
genomic: ACTTGGTACACGGTTGGGGTCTGGATTTCGCCATACGTCGCTGTGTTGAGgtaactctgc ... gtccatacagCCTGCTCACGAGAAAATTGGAGTAGTTGATGAAACATGGATTATACACGTC
ttctgattagtgaatattctccgctcttcttaagcgcatcattttgtccatacagCCTGCTCACGAGAAAATTGGAGTAGTTGATGAAACATGGATTATACACGTCGGTGTACCATCACTTGGAAATCAG
ttctgat putative branch site (score: 3)
ttttgtcc putative PPT
tgaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactctgcttccgaactcaagtttgttatgagttaatattgtataaacagtcagctattgcggaattctgattagtgaatattctccgctcttcttaagcgcatcattttgtccatacagCCTGCTCACGAGAAAATTGGAGTAGTTGATGAAACATGGATTATACACGTCGGTGTACCATCACTTGGAAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA