Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattgtaactctctcgatctttcatgctttctttaccatgtacttcttcctcaattccttgttttttttctgaactatgtggctgtttgtttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGTCTCCATGCCGCTGACCTTATTCACGAAGCCTCAAACGCTATTGCGATGG

Basic information

species Physcomitrella patens
transcript PP1S35_94V6.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162239089|gb|FC416228.1|FC416228
EST:     AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
genomic: AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
EST: gi|19786466|gb|BQ040483.1|BQ040483
EST:     AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGGCAGACACTGGCGAAATTCT
genomic: AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCT
EST: gi|67692532|gb|BJ952765.1|BJ952765
EST:     AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
genomic: AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
EST: gi|162195482|gb|FC370899.1|FC370899
EST:     AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
genomic: AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
EST: gi|162185503|gb|FC362572.1|FC362572
EST:     AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
genomic: AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
EST: gi|162185502|gb|FC362571.1|FC362571
EST:     AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATTTCCCGGCCAGACACTGGGGAAATTCTGGGTGTTCACATTTTTGGT
genomic: AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
EST: gi|162167618|gb|FC343750.1|FC343750
EST:     AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
genomic: AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
EST: gi|7584064|gb|AW699962.1|AW699962
EST:     GCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
genomic: GCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
EST: gi|162170368|gb|FC346773.1|FC346773
EST:     AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
genomic: AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
EST: gi|67694918|gb|BJ955151.1|BJ955151
EST:     AGCCAANCACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
genomic: AGCCAA-CACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
EST: gi|208380575|gb|DC919361.1|DC919361
EST:     AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
genomic: AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
EST: gi|162166908|gb|FC343293.1|FC343293
EST:     AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
genomic: AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
EST: gi|162239088|gb|FC416227.1|FC416227
EST:     AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
genomic: AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcctcaattccttgttttttttctgaactatgtggctgtttgtttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGTCTCCATGCCGCTGACCTTATTCACGAAGCCTCAAACGCTATTGCGATGG
                                        tttgttt  CT-rich tract
             ttgtttttttt  TA-rich tract