1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tttttccgattagtgtattcaagaaggtttgtcataattttaagttgcatttttgtgacaaagatcacattacaaagtctcactgagtggtgttgctcagGACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGGGATTATGGAAAGCTTCAAGAAGTTCAACCAGGACTTTATGGCACAATAC
species | Physcomitrella patens |
transcript | PP1S341_73V6.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGG GACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGGEST: gi|162165682|gb|FC342249.1|FC342249
genomic: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGGgtacgttttc ... tgttgctcagGACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGG
EST: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGG GACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGGEST: gi|18334610|gb|BJ166627.1|BJ166627
genomic: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGGgtacgttttc ... tgttgctcagGACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGG
EST: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGG GACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGGEST: gi|162245386|gb|FC421288.1|FC421288
genomic: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGGgtacgttttc ... tgttgctcagGACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGG
EST: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGG GACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGGEST: gi|162187115|gb|FC362897.1|FC362897
genomic: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGGgtacgttttc ... tgttgctcagGACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGG
EST: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGG GACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGGEST: gi|162151891|gb|FC328137.1|FC328137
genomic: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGGgtacgttttc ... tgttgctcagGACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGG
EST: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGG GACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGGEST: gi|162173952|gb|FC349752.1|FC349752
genomic: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGGgtacgttttc ... tgttgctcagGACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGG
EST: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGG GACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGGEST: gi|162158809|gb|FC335332.1|FC335332
genomic: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGGgtacgttttc ... tgttgctcagGACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGG
EST: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGG GACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGGEST: gi|162185273|gb|FC361783.1|FC361783
genomic: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGGgtacgttttc ... tgttgctcagGACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGG
EST: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGG GACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGGEST: gi|208350104|gb|DC921908.1|DC921908
genomic: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGGgtacgttttc ... tgttgctcagGACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGG
EST: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGG GACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGGEST: gi|37842040|gb|BJ600048.1|BJ600048
genomic: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGGgtacgttttc ... tgttgctcagGACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGG
EST: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGG GACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGGEST: gi|67692166|gb|BJ952399.1|BJ952399
genomic: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGGgtacgttttc ... tgttgctcagGACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGG
EST: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGG GACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGG
genomic: GCTACCGGAATCTCCACCGTTCCAGGTTCAGGGTTCGGCCAGAAAGAGGGgtacgttttc ... tgttgctcagGACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGG
tgcatttttgtgacaaagatcacattacaaagtctcactgagtggtgttgctcagGACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGGGATTATGGAAAGCTTCAAGAAGTTCAACCAGGACTTTATGGCACAATAC
gtctcac putative branch site (score: 3)
attacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttccgattagtgtattcaagaaggtttgtcataattttaagttgcatttttgtgacaaagatcacattacaaagtctcactgagtggtgttgctcagGACCTTTCACGTGCGGACTACAATTCTGCCATCTGAGAAAGACATGCCTGGGATTATGGAAAGCTTCAAGAAGTTCAACCAGGACTTTATGGCACAATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT