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gtgagtttccctctatttcattgtcactgtccacagtgaagtggaaagccaggttatctcttaattgaaatttagacgagctgaaggtgtaatttaatttgatcattttcttctcttgcaattagatgtactatgttagccgtctgatatttaataattgtttgaatagGGTGGTGATGCAACTGTCAATTCCATTCACATTATGCCTAAGAACCCGGAGCATATTGTCGTTTGCAATAGAGCATCTGCTGTCTATGTCATGACATTAC
species | Physcomitrella patens |
transcript | PP1S31_68V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCTCCATTACGA GGTGGTGATGCAACTGTCAATTCCATTCACATTATGCCTAAGAACCCGGAGEST: gi|67696983|gb|BJ957216.1|BJ957216
genomic: TGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCTCCATTACGAgtgagtttcc ... gtttgaatagGGTGGTGATGCAACTGTCAATTCCATTCACATTATGCCTAAGAACCCGGAG
EST: TGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCTCCATTACGA GGTGGTGATGCAACTGTCAATTCCATTCACATTATGCCTAAGAACCCGGAGEST: gi|208354419|gb|DC953825.1|DC953825
genomic: TGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCTCCATTACGAgtgagtttcc ... gtttgaatagGGTGGTGATGCAACTGTCAATTCCATTCACATTATGCCTAAGAACCCGGAG
EST: TGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCTCCATTACGA GGTGGTGATGCAACTGTCAATTCCATTCACATTATGCCTAAGAACCCGGAGEST: gi|37833181|gb|BJ591193.1|BJ591193
genomic: TGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCTCCATTACGAgtgagtttcc ... gtttgaatagGGTGGTGATGCAACTGTCAATTCCATTCACATTATGCCTAAGAACCCGGAG
EST: TGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCTCCATTACGA GGTGGTGATGCAACTGTCAATTCCATTCACATTATGCCTAAGAACCCGGAGEST: gi|67726106|gb|BJ976365.1|BJ976365
genomic: TGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCTCCATTACGAgtgagtttcc ... gtttgaatagGGTGGTGATGCAACTGTCAATTCCATTCACATTATGCCTAAGAACCCGGAG
EST: TGGAAACCACAGATTGTCTACACACTTTCAAACCACCGCCTCCATTACGA GGTGGTGATGCAACTGTCAATTCCATTCACATTATGCCTAAGAACCCGGAGEST: gi|208347871|gb|DC917592.1|DC917592
genomic: TGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCTCCATTACGAgtgagtttcc ... gtttgaatagGGTGGTGATGCAACTGTCAATTCCATTCACATTATGCCTAAGAACCCGGAG
EST: TGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCTCCATTACGA GGTGGTGATGCAACTGTCAATTCCATTCACATTATGCCTAAGAACCCGGAGEST: gi|208400522|gb|DC925272.1|DC925272
genomic: TGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCTCCATTACGAgtgagtttcc ... gtttgaatagGGTGGTGATGCAACTGTCAATTCCATTCACATTATGCCTAAGAACCCGGAG
EST: CCACAGATTGTCTACACACTTTCAAACCACCGCCTCCATTACGA GGTGGTGATGCAACTGTCAATTCCATTCACATTATGCCTAAGAACCCGGAGEST: gi|37834363|gb|BJ592375.1|BJ592375
genomic: CCACAGATTGTCTACACACTTTCAAACCACCGCCTCCATTACGAgtgagtttcc ... gtttgaatagGGTGGTGATGCAACTGTCAATTCCATTCACATTATGCCTAAGAACCCGGAG
EST: TGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCTCCATTACGA GGTGGTGATGCAACTGTCAATTCCATTCACATTATGCCTAAGAACCCGGAGEST: gi|37840113|gb|BJ598121.1|BJ598121
genomic: TGAAAACCACAGATTGTCTACACACTTTCAAACCACCGCCTCCATTACGAgtgagtttcc ... gtttgaatagGGTGGTGATGCAACTGTCAATTCCATTCACATTATGCCTAAGAACCCGGAG
EST: GAAAACCACAGATTGGTGTACACACTTTCAAACCACCGCCTCCATTACGA GGTGGTGATGCAACTGTCAATTCCATTCACATTATGCNTAAGAACCCGGAGEST: gi|208399731|gb|DC924929.1|DC924929
genomic: GAAAACCACAGATT-GTCTACACACTTTCAAACCACCGCCTCCATTACGAgtgagtttcc ... gtttgaatagGGTGGTGATGCAACTGTCAATTCCATTCACATTATGCCTAAGAACCCGGAG
EST: AACCACAGATTGTNTACACACTTTCAAACCACCGCCTNCATTACGN GGTGGTGATGCANCTGTCAATTCCATTCACATTATGCNTAAGAACCCGGAG
genomic: AACCACAGATTGTCTACACACTTTCAAACCACCGCCTCCATTACGAgtgagtttcc ... gtttgaatagGGTGGTGATGCAACTGTCAATTCCATTCACATTATGCCTAAGAACCCGGAG
cttgcaattagatgtactatgttagccgtctgatatttaataattgtttgaatagGGTGGTGATGCAACTGTCAATTCCATTCACATTATGCCTAAGAACCCGGAGCATATTGTCGTTTGCAATAGAGCATCTGCTGTCTATGTCATGACATTAC
atttaat putative branch site (score: 1)
tgatatttaataattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttccctctatttcattgtcactgtccacagtgaagtggaaagccaggttatctcttaattgaaatttagacgagctgaaggtgtaatttaatttgatcattttcttctcttgcaattagatgtactatgttagccgtctgatatttaataattgtttgaatagGGTGGTGATGCAACTGTCAATTCCATTCACATTATGCCTAAGAACCCGGAGCATATTGTCGTTTGCAATAGAGCATCTGCTGTCTATGTCATGACATTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA