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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggattgcccttatcaacttcttttattccattaatccgtcttgctggcgggtaatgttaggggttttcacgttttgctcatcttgctttaattttaaaaatcatagtcctgacaacaagaactaaatcatttgaaacaaaactgagcctttatttttcctttgcagGACATTGTGGATCCAGTGCAAGATGAAATGCTGGCATCTTTTGTTGTGGATAGTCATTTTAAGTCCCACCCAAAGCACCAAGATTCTGACGACGACCAAC

Basic information

species Physcomitrella patens
transcript PP1S28_266V6.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162200940|gb|FC377343.1|FC377343
EST:     AGCTCACTGATCCTATTCTTTCTCGATTTGATGTCCTCTGTGTGGTGAAG                         GACATTGTGGATCCAGTGCAAGATGAAATGCTGGCATCTTTTGTTGTGGAT
genomic: AGCTCACTGATCCTATTCTTTCTCGATTTGATGTCCTCTGTGTGGTGAAGgtggattgcc ... tcctttgcagGACATTGTGGATCCAGTGCAAGATGAAATGCTGGCATCTTTTGTTGTGGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaacaagaactaaatcatttgaaacaaaactgagcctttatttttcctttgcagGACATTGTGGATCCAGTGCAAGATGAAATGCTGGCATCTTTTGTTGTGGATAGTCATTTTAAGTCCCACCCAAAGCACCAAGATTCTGACGACGACCAAC
        aactaaa  putative branch site (score: 2)
                                   cctttatttttccttt  putative PPT
           taaatcatttgaaa  TA-rich tract