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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagtagccgtcaactgttctaactgttgagtgatggtgatccgtcttcctggtctacatctgtcgattttttacactgtggggaattgcttacattctggccacgtccatggtgatcttgcattcgataagactgctcattatgccatagttctgcagATCCGACGTATATGATTCGAGCAATTCCAAGCAATGCTTCGGACAATGTCTACTGCACATTGCTGGCTCATAGCGCCATCCATGGGGCTATGGCAGGGTA

Basic information

species Physcomitrella patens
transcript PP1S282_45V6.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S282_45V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: LOC_Os01g53680.1 (Oryza sativa), 3'ss of exon 12
gtacagtagccgtcaactgttctaactgttgagtgatggtgatccgtcttcctggtctacatctgtcgattttttacactgtggggaattgcttacattctggccacgtccatggtgatcttgcattcgataagactgctcattatgccatagttctgcagATCCGACGTATATGATTCGAGCAATTCCAAGCAATGCTTCGGACAATGTCTACTGCACATTGCTGGCTCATAGCGCCATCCATGGGGCTATGGCAGGGTA
                      |||   |   ||  |  || ||  |  ||   |   |        | |  |||  | |        ||   |  ||    |   |  ||   |  || ||||| |       || ||   ||||  | || |   |||||||| || || ||||| || ||||||||||||||||| || |||||||||||||||||| ||||||| || || ||||| |||||||| ||||| || ||
---------------------gtaaagatcttgtttttatgttcaattctcgatgcacatgcggagtgctagtttgaagtactactttttatatgtatctgagtatctccctatggaatgttgcaat------aacagcctgttatttc-taatg--gcagATCCAACCTACATGATCCGTGCAATTCCAAGCAATGCATCAGACAATGTCTACTGCACACTGCTGGCGCACAGTGCCATTCATGGGGCAATGGCTGGATA

upper sequence: PP1S282_45V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: LOC_Os05g44922.1 (Oryza sativa), 3'ss of exon 12
gtacagtagccgtcaactgttctaactgttgagtgatggtgatccgtcttcctggtctacatctgtcgattttttacactgtggggaattgct-tacattctggccacgtccatggtgatcttgcattcgataagactgctcattatgccatagttctgcagATCCGACGTATATGATTCGAGCAATTCCAAGCAATGCTTCGGACAATGTCTACTGCACATTGCTGGCTCATAGCGCCATCCATGGGGCTATGGCAGGGTA
                                                            | || |   |  || |||| |       ||| |  ||||  |      |  |    |  |  |   ||   | |   | |  |||||    ||  | ||||||||| || || ||||| ||||| |||||||||||||| || |||||||||||||||||  ||||||| || || || || ||||| || ||||| || ||
----------------------------------------------------------gtaactatgtttgcttcacacaggataaggttgttacacatcttattactggtctctattgtactaagtt--gtgaagttccctattat----ta--tttgcagATCCTACCTACATGATCCGAGCTATTCCAAGCAATGCATCAGACAATGTCTACTGCACGCTGCTGGCCCACAGTGCTATTCATGGTGCAATGGCCGGCTA

upper sequence: PP1S282_45V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: GRMZM2G443985_T04 (Zea mays), 3'ss of exon 12
gtacagtagccgtcaactgttctaactgttgagtgatggtgatccgtcttcctggtctacatctgtcgattttttacactgtggggaattgcttacattctggccacgtccatggtgatcttgcattcgata-agactgctcattatgccatagttctgcagATCCGACGTATATGATTCGAGCAATTCCAAGCAATGCTTCGGACAATGTCTACTGCACATTGCTGGCTCATAGCGCCATCCATGGGGCTATGGCAGGGTA
                                                                                   |  | | | || | |    | ||  |    ||           | | || | ||  ||||        |  | |||||||||| ||||| ||||| || || || |||||||||||||| || || ||||| |||||| |||||||||| ||||   ||||||| || ||||| || ||
-----------------------------------------------------------------------------------gtcagtggttttcttcggtgtcatatttcagggccagaactgctagttacacacatctcagatgtttcttctactgcagATCCAACGTACATGATACGTGCCATCCCAAGCAATGCTTCTGATAACGTCTATTGCACACTGCTGGCTCACAGCGTGGTCCATGGAGCCATGGCTGGATA

upper sequence: PP1S282_45V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: GRMZM5G816636_T02 (Zea mays), 3'ss of exon 12
gtacagtagccgtcaactgttctaactgttgagtgatggtgatccgtcttcctggtctacatctgtcgattttttacactgtggggaattgcttacattctggccacgtccatggtgatcttgcattcgataagactgctcattatgccatagttctgcagATCCGACGTATATGATTCGAGCAATTCCAAGCAATGCTTCGGACAATGTCTACTGCACATTGCTGGCTCATAGCGCCATCCATGGGGCTATGGCAGGGTA
                                                                |||  |  ||| | |||     |  ||||| | ||  ||| |             || ||||   |||   | |   ||  ||  ||  | |||||||||| ||||| ||||| || || ||||| ||||| || || || ||||||||||||||| |||| ||||| || |   ||||||| || ||||| || ||
----------------------------------------------------------------gtcagtgattttctctggtatca--tgcttgctttacggcaagaattg-------ctagcatcaaatatctcag---atgctgttatcctactgcagATCCAACGTACATGATACGTGCCATTCCTAGCAACGCCTCTGATAATGTCTACTGCACACTGCTAGCTCACAGTGTGGTCCATGGAGCCATGGCTGGATA

upper sequence: PP1S282_45V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: GRMZM5G879882_T03 (Zea mays), 3'ss of exon 12
gtacagtagccgtcaactgttctaactgttgagtgatggtgatccgtcttcctggtctacatctgtcgattttttacactgtggggaattgcttacattctggccacgtccatggtgatcttgcattcgataagactgctcattatgccatagttctgcagATCCGACGTATATGATTCGAGCAATTCCAAGCAATGCTTCGGACAATGTCTACTGCACATTGCTGGCTCATAGCGCCATCCATGGGGCTATGGCAGGGTA
                                                            |   |||   |||||  ||| ||| |||     |      | |  |  |  |   ||     | ||  ||| |   |||     ||    |   | || |||||| || || ||||| || || |||||||||||||| || ||||||||||| |||||  |||| || ||||| ||||| ||||| || ||||| || ||
----------------------------------------------------------gtaatcgtcttcttttt-tact-tggtgaacgcagtgttagtttgtaatttatagcatgtcaaggaatctgatgaag-tgcctgccatttttt---tatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA

upper sequence: PP1S282_45V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: GRMZM2G004932_T01 (Zea mays), 3'ss of exon 12
gtacagtagccgtcaactgttctaactgttgagtgatggtgatccgtcttcctggtctacatctgtcgattttttacactgtggggaattgcttacattctggccacgtccatggtgatcttgcattc---gataagactgct-cattatgccatagt--tctgcagATCCGACGTATATGATTCGAGCAATTCCAAGCAATGCTTCGGACAATGTCTACTGCACATTGCTGGCTCATAGCGCCATCCATGGGGCTATGGCAGGGTA
                                                                                |       |  ||   ||| | || |     || ||  |    ||||    |||  | |||   || ||| |||| |   |  |||||||| || || ||| | || || |||||||||||||| || |||||||||||||| ||| | || || || || || |||||||| || ||||| |||||
-----------------------------------------------------------------------------gtagccatttgtaactcttatttttgctattgatatagttgtaacacatttctagattggtctgtgacaatattccatcggaattggcagATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTACTGTACACTTCTAGCCCACAGTGCTATCCATGGTGCAATGGCGGGGTA

upper sequence: PP1S282_45V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: GLYMA06G09320.1 (Glycine max), 3'ss of exon 10
--------gtacagtagccgtcaactgttctaactgttgagtgatggtgatccgtcttcctggtctacatctgtc---gattttttacactgtggggaatt--gcttacattctggccacgtccatggtgatcttgcattcgataagactgctcattat-gccatagt-tctgc-agATCCGACGTATATGATTCGAGCAATTCCAAGCAATGCTTCGGACAATGTCTACTGCACATTGCTGGCTCATAGCGCCATCCATGGGGCTATGGCAGGGTA
         |     |||  ||  || |||    | ||||   ||     ||   |||  |  |  |  | | |    |||||   |   | |    ||||   || ||| |     ||  |  || | | | |         |  ||     | || | |  || || ||||| |||||| || || |||||||| ||||||||||||||||| || |||||||||||||| ||| | || ||||| || ||  ||||||| || |||||||||||
gtcagtttctcttacagcattctcctcttcc--tttttgacctatttatttcttacttagtctttcatttttatttcggatttgaaaggttttttaaaatttgactgacaattatctcattttaattgagttatc-tgcctagtgggataagactttgttgttattgtatctgccagATCCAACTTACATGATTCGGGCAATTCCAAGCAATGCATCAGACAATGTCTACTGTACACTTCTTGCTCAGAGTGCAGTCCATGGTGCAATGGCAGGGTA

upper sequence: PP1S282_45V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: GLYMA07G15170.1 (Glycine max), 3'ss of exon 11
gtacagtagccgtcaactgttctaactgttgagtgatggtgatccgtcttcctggtctacatctgtcgattttttacactgtggggaattgcttacattctggc-cacgtccatggtgatcttgcattcgataagactgctcattatgccatagttctgcagATCCGACGTATATGATTCGAGCAATTCCAAGCAATGCTTCGGACAATGTCTACTGCACATTGCTGGCTCATAGCGCCATCCATGGGGCTATGGCAGGGTA
                                                             | |||  |  ||  | |||    ||||||       | |   | |||    |         ||  |   | |  | |||    | |   || ||| | ||||||| || |||||||||||||| ||||||||||||||||| ||||| || ||||||||| | || ||||| || ||  | ||||| || |||||||| ||
------------------------------------------------------------gtttgtaaagatt--aaacttcatggaattataagtgtgcacacacacactgaaaagagcaatggctgaaagagtaatgccttctct-ttat-gttttacagATCCAACTTATATGATTCGAGCTATTCCAAGCAATGCTTCTGACAACGTGTACTGCACACTTCTTGCTCAAAGTGCAGTTCATGGAGCAATGGCAGGTTA

upper sequence: PP1S282_45V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: GLYMA08G03570.1 (Glycine max), 3'ss of exon 11
gtacagtagccgtcaactgttctaactgttgagtgatggtgatccgtcttcctggtctacatctgtcgattttttacactgtggggaattgcttacattctggccacgtccatggtgatcttgcattcgataagactgctcattatgccatagttctgcagATCCGACGTATATGATTCGAGCAATTCCAAGCAATGCTTCGGACAATGTCTACTGCACATTGCTGGCTCATAGCGCCATCCATGGGGCTATGGCAGGGTA
                           |||  || | |   |       |     | ||| | |||  |  | |     |||  |  ||| | |  ||    ||   |   |  |  |    | | || |    | |||   || |   |   ||   ||||||| ||||||||||| |||||| |||||||||||||||| ||||| || ||||||||| | || ||||| || ||  | ||||| || |||||||| ||
---------------------------gttc-gtaaagacaaaaaactatatatttatacgtatgtgtacatgtgtgcatgttcg--attacatttatgtgtgcattgcatactgaaaggaggaaatcaa--gcattgcatttttttttactatttgacagATCCAACGTATATGATCCGAGCAGTTCCAAGCAATGCTTCTGACAACGTGTACTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCCATGGCAGGTTA

upper sequence: PP1S282_45V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: GLYMA05G36050.1 (Glycine max), 3'ss of exon 11
gtacagtagccgtcaactgttctaactgttgagtgatggtgatccgtcttcctggtctacatctgtcgattttttacac-tgtggggaattgcttacattc-tggccacgtc-catggtgatcttgcattcgataagactgctcattatgcc-atagttctgcagATCCGACGTATATGATTCGAGCAATTCCAAGCAATGCTTCGGACAATGTCTACTGCACATTGCTGGCTCATAGCGCCATCCATGGGGCTATGGCAGGGTA
                                          | |||         ||| |     | ||| |    |  ||||     ||| ||| |||  ||    | |  |||  |||    | |    || |  |    |||| |    |   ||   ||||||| ||||||||||| |||||  |||||||||||||||| ||||| || ||||||||| | || ||||| || ||  | ||||| || |||||||| ||
-----------------------------------------gttcgttaagacaaactata-----caattatacgtatgtgtgcatgtttgattatatttatgtatgcattgcatactgaaa--ggaggaaatcaagcattgcattttttttactatttgacagATCCAACGTATATGATCCGAGCTGTTCCAAGCAATGCTTCTGACAACGTGTACTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCGATGGCAGGTTA

upper sequence: PP1S282_45V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: GLYMA01G00870.1 (Glycine max), 3'ss of exon 11
gtacagtagccgtcaactgttctaactgttgagtgatggtgatccgtcttcctggtctacatctgtcgattttttacactgtggggaattgcttacattctggccacgtccatggtgatcttgcattcgataagactgctcattatgccatagttctgcagATCCGACGTATATGATTCGAGCAATTCCAAGCAATGCTTCGGACAATGTCTACTGCACATTGCTGGCTCATAGCGCCATCCATGGGGCTATGGCAGGGTA
                                                             | |||  |  ||  |   |    ||||||   |   | |    |||    |  |      ||  |   | |  | |||    | |    | ||| | ||||||| || |||||||| ||||| |||||||||||||| || ||||| || ||||||||| | || ||||| || ||  | ||||| || |||||||| ||
------------------------------------------------------------gtttgtaaagattaaaagtt-catggaattatgtgtgtaca---cacactgaaaggagcaatggctgaaagagtaatgccttctcttttct-gttttacagATCCAACCTATATGATCCGAGCTATTCCAAGCAATGCCTCTGACAACGTGTACTGCACACTTCTTGCTCAAAGTGCAGTTCATGGAGCAATGGCAGGTTA

upper sequence: PP1S282_45V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 11
gtacagtagccgtcaactgttctaactgttgagtgatggtgatccgtcttcctggtctacatctgtcgattttttacactgtggggaattgcttacattctggccacgtccatggtgatcttgcattcgataagactgctcattatgccatagttctg-cagATCCGACGTATATGATTCGAGCAATTCCAAGCAATGCTTCGGACAATGTCTACTGCACATTGCTGGCTCATAGCGCCATCCATGGGGCTATGGCAGGGTA
                                                                                ||  | |    ||  | ||||    |  |  | | ||  |        | |   ||       |   |  |   |||  ||||||| ||||||||||| || ||  ||||||||||||| || ||||||||||| |||||| | || ||||| || ||  | ||||| || |||||||||||
--------------------------------------------------------------------------------gtttgtatacactatctttctaat-atatagaagctgggca-atggctggtctaaccaagtgctgcactttttgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCTATTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGGTA

upper sequence: PP1S282_45V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: Vv16s0013g01140.t01 (Vitis vinifera), 3'ss of exon 12
gtacagtagccgtcaactgttctaactgttgagtgatggtgatccgtcttcctggtctacatctgtcgattttttacactgtggggaattgcttacattctggccacgtccatggtgatcttgcattcgataagactgctcattatgccatagttctgcagATCCGACGTATATGATTCGAGCAATTCCAAGCAATGCTTCGGACAATGTCTACTGCACATTGCTGGCTCATAGCGCCATCCATGGGGCTATGGCAGGGTA
                                                      || |  || ||| ||| ||    |||||       | |||  | |  |      || |     || |   |    |||    |  | |||||    |   ||| ||||||| || || ||||| ||||| |||||||| ||||| || |||||| ||||||||||  | || || ||||| ||  | |||||||| |||||||||||
------------------------------------------------------gtttttat-tgttgatattgctaactgttta----ttcttttaataggattttatctaaaaaaatttcaaagattatatttttatttattatcttgt--ctctacagATCCAACATACATGATCCGAGCTATTCCAAGTAATGCATCAGACAATATCTACTGCACCCTCCTTGCACATAGTGCTGTACATGGGGCCATGGCAGGGTA

upper sequence: PP1S282_45V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: EFJ21599 (Selaginella moellendorffii), 3'ss of exon 11
gtacagtagccgtcaactgttctaactgttgagtgatggtgatccgtcttcctggtctacatctgtcgattttttacactgtggggaattgcttacattctggccacgtccatggtgatcttgcattcgataagactgctcattatgccatagttctgcagATCCGACGTATATGATTCGAGCAATTCCAAGCAATGCTTCGGACAATGTCTACTGCACATTGCTGGCTCATAGCGCCATCCATGGGGCTATGGCAGGGTA
                                                                                                    |     | | | || |  |||||| ||        ||  ||  |   |  | | | | ||||||| ||||||||||| |||||||| |  ||||| || ||||||||||||||||||||  | || ||||| || || ||||| || || ||||| || ||
---------------------------------------------------------------------------------------------------gtcagtgcctacgtgtttttcttgcctttt------cttttctctcaacttttgattttcagATCCAACGTATATGATCCGAGCAATCCGGAGCAACGCCTCGGACAATGTCTACTGCACTCTACTCGCTCACAGTGCGATCCACGGAGCAATGGCTGGCTA

upper sequence: PP1S282_45V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: EFJ23976 (Selaginella moellendorffii), 3'ss of exon 11
gtacagtagccgtcaactgttctaactgttgagtgatggtgatccgtcttcctggtctacatctgtcgattttttacactgtggggaattgcttacattctggccacgtccatggtgatcttgcattcgataagactgctcattatgccatagttctgcagATCCGACGTATATGATTCGAGCAATTCCAAGCAATGCTTCGGACAATGTCTACTGCACATTGCTGGCTCATAGCGCCATCCATGGGGCTATGGCAGGGTA
                                                                                                    |     | | |  | |  |||||| |||       ||  ||  |   |  | | | | ||||||| ||||||||||| |||||||| |  ||||| || ||||||||||||||||||||  | || ||||| || || ||||| || || ||||| || ||
---------------------------------------------------------------------------------------------------gtcagtgcctacgagtttttcttgccttct------cttttctctcaacttttgattttcagATCCAACGTATATGATCCGAGCAATCCGGAGCAACGCCTCGGACAATGTCTACTGCACTCTACTCGCTCACAGTGCGATCCACGGAGCAATGGCTGGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtccatggtgatcttgcattcgataagactgctcattatgccatagttctgcagATCCGACGTATATGATTCGAGCAATTCCAAGCAATGCTTCGGACAATGTCTACTGCACATTGCTGGCTCATAGCGCCATCCATGGGGCTATGGCAGGGTA
                                 tcattat  TA-rich tract