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gtgaaaaaaaaaaaatcatttcgtcgcaagtatcgttatcagtgacgttaagtatctttgggatccatcttccagtgctgcagtgcttcgaaatgttttatttatgtggtatggtcatatgacttacagAATCGGGCTAGTACCGCGGAGGCAAGGTTGTCAGCTTTGAGAGAGCAGTCAGAGTCAGTGAAGGCAGAAGCTGCGGAATGGCAGCGAAAGTATGAGACGG
species | Physcomitrella patens |
transcript | PP1S265_7V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGCAGCGAGCTGAGACTGATAGACTGAACTCTGAGGTTGCATCTCTCCAG AATCGGGCTAGTACCGCGGAGGCAAGGTTGTCAGCTTTGAGAGAGCAGTCAEST: gi|162162511|gb|FC338605.1|FC338605
genomic: TGCAGCGAGCTGAGACTGATAGACTGAACTCTGAGGTTGCATCTCTCCAGgtgaaaaaaa ... tgacttacagAATCGGGCTAGTACCGCGGAGGCAAGGTTGTCAGCTTTGAGAGAGCAGTCA
EST: TGCAGCGAGCTGAGACTGATAGACTGAACTCTGAGGTTGCATCTCTCCAG AATCGGGCTAGTACCGCGGAGGCAAGGTTGTCAGCTTTGAGAGAGCAGTCAEST: gi|208352181|gb|DC906298.1|DC906298
genomic: TGCAGCGAGCTGAGACTGATAGACTGAACTCTGAGGTTGCATCTCTCCAGgtgaaaaaaa ... tgacttacagAATCGGGCTAGTACCGCGGAGGCAAGGTTGTCAGCTTTGAGAGAGCAGTCA
EST: TGCAGCGAGCTGAGACTGATAGACTGAACTCTGAGGTTGCATCTCTCCAG AATCGGGCTAGTACCGCGGAGGCAAGGTTGTCAGCTTTGAGAGAGCAGTCA
genomic: TGCAGCGAGCTGAGACTGATAGACTGAACTCTGAGGTTGCATCTCTCCAGgtgaaaaaaa ... tgacttacagAATCGGGCTAGTACCGCGGAGGCAAGGTTGTCAGCTTTGAGAGAGCAGTCA
gtgctgcagtgcttcgaaatgttttatttatgtggtatggtcatatgacttacagAATCGGGCTAGTACCGCGGAGGCAAGGTTGTCAGCTTTGAGAGAGCAGTCAGAGTCAGTGAAGGCAGAAGCTGCGGAATGGCAGCGAAAGTATGAGACGG
aaatgttttatttatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaaaaaaaaaaatcatttcgtcgcaagtatcgttatcagtgacgttaagtatctttgggatccatcttccagtgctgcagtgcttcgaaatgttttatttatgtggtatggtcatatgacttacagAATCGGGCTAGTACCGCGGAGGCAAGGTTGTCAGCTTTGAGAGAGCAGTCAGAGTCAGTGAAGGCAGAAGCTGCGGAATGGCAGCGAAAGTATGAGACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC