1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...agtgggggttttagccgtctgtacttgtgggcaaactcgttcgagctcgagtgcttaggtttttgttcttttctaagagatatggtgattgttttcgcagTATGTTGAGAGGAGATTTATTCGGAAGTGGAAGCCTCAATCAGGGGTTCCTCCGGTGGCACGACAAGTATGGGATGCTGTTTGGACTAACAAGCCACAGC
species | Physcomitrella patens |
transcript | PP1S249_58V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CAAAAGCCAATGATCCCATTGCTGTCAAAGAAAAGTTCATACATGCCAAG TATGTTGAGAGGAGATTTATTCGGAAGTGGAAGCCTCAATCAGGGGTTCCTEST: gi|162232512|gb|FC408374.1|FC408374
genomic: CAAAAGCCAATGATCCCATTGCTGTCAAAGAAAAGTTCATACATGCCAAGgtttgtctag ... gttttcgcagTATGTTGAGAGGAGATTTATTCGGAAGTGGAAGCCTCAATCAGGGGTTCCT
EST: CAAAAGCCAATGATCCCATTGCTGTCAAAGAAAAGTTCATACATGCCAAG TATGTTGAGAGGAGATTTATTCGGAAGTGGAAGCCTCAATCAGGGGTTCCTEST: gi|162205770|gb|FC381008.1|FC381008
genomic: CAAAAGCCAATGATCCCATTGCTGTCAAAGAAAAGTTCATACATGCCAAGgtttgtctag ... gttttcgcagTATGTTGAGAGGAGATTTATTCGGAAGTGGAAGCCTCAATCAGGGGTTCCT
EST: CAAAAGCCAATGATCCCATTGCTGTCAAAGAAAAGTTCATACATGCCAAG TATGTTGAGAGGAGATTTATTCGGAAGTGGAAGCCTCAATCAGGGGTTCCTEST: gi|7067083|gb|AW496938.1|AW496938
genomic: CAAAAGCCAATGATCCCATTGCTGTCAAAGAAAAGTTCATACATGCCAAGgtttgtctag ... gttttcgcagTATGTTGAGAGGAGATTTATTCGGAAGTGGAAGCCTCAATCAGGGGTTCCT
EST: GAAAAGTTCATACATGCCAAG TATGTTGAGAGGAGATTTATTCGGAAGTGGAAGCCTCAATCAGGGGTTCCT
genomic: GAAAAGTTCATACATGCCAAGgtttgtctag ... gttttcgcagTATGTTGAGAGGAGATTTATTCGGAAGTGGAAGCCTCAATCAGGGGTTCCT
ctcgagtgcttaggtttttgttcttttctaagagatatggtgattgttttcgcagTATGTTGAGAGGAGATTTATTCGGAAGTGGAAGCCTCAATCAGGGGTTCCTCCGGTGGCACGACAAGTATGGGATGCTGTTTGGACTAACAAGCCACAGC
ttgttttc CT-rich tract
tttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgggggttttagccgtctgtacttgtgggcaaactcgttcgagctcgagtgcttaggtttttgttcttttctaagagatatggtgattgttttcgcagTATGTTGAGAGGAGATTTATTCGGAAGTGGAAGCCTCAATCAGGGGTTCCTCCGGTGGCACGACAAGTATGGGATGCTGTTTGGACTAACAAGCCACAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT