1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagtattttggagtcatgtgcactgaattggggtatcagtttgtttatttcttacgcttcaaacttcagggaagagtcaactgaatgcccctagttgatgtaatgttgtctcgactcaaacgcagtagatgcaatctattttaagcacttatgtgaagattttgcactcatagaactttcggtttgtctgcagTGGCATGCCTGGTGGACCTCAGCCTCCTGCTTATGGTGGTCAGCATTACATGCAGCAG
species | Physcomitrella patens |
transcript | PP1S235_102V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TATGGCGGTGGTAGAGGGCCTCCAGTCGGTGGTCGAGGACAGCAGTTTGG TGGCATGCCTGGTGGACCTCAGCCTCCTGCTTATGGTGGTCAGCATTACATEST: gi|37853283|gb|BJ611291.1|BJ611291
genomic: TATGGCGGTGGTAGAGGGCCTCCAGTCGGTGGTCGAGGACAGCAGTTTGGgtaagtattt ... ttgtctgcagTGGCATGCCTGGTGGACCTCAGCCTCCTGCTTATGGTGGTCAGCATTACAT
EST: TATGGCGGTGGTAGAGGGCCTCCAGTCGGTGGTCGAGGACAGCAGTTTGG TGGCATGCCTGGTGGACCTCAGCCTCCTGCTTATGGTGGTCAGCATTACATEST: gi|67697408|gb|BJ957641.1|BJ957641
genomic: TATGGCGGTGGTAGAGGGCCTCCAGTCGGTGGTCGAGGACAGCAGTTTGGgtaagtattt ... ttgtctgcagTGGCATGCCTGGTGGACCTCAGCCTCCTGCTTATGGTGGTCAGCATTACAT
EST: TATGGCGGTGGTAGAGGGCCTCCAGTCGGTGGTCGAGGACAGCAGTTTGG TGGCATGCCTGGTGGACCTCAGCCTCCTGCTTATGGTGGTCAGCATTACAT
genomic: TATGGCGGTGGTAGAGGGCCTCCAGTCGGTGGTCGAGGACAGCAGTTTGGgtaagtattt ... ttgtctgcagTGGCATGCCTGGTGGACCTCAGCCTCCTGCTTATGGTGGTCAGCATTACAT
ttttaagcacttatgtgaagattttgcactcatagaactttcggtttgtctgcagTGGCATGCCTGGTGGACCTCAGCCTCCTGCTTATGGTGGTCAGCATTACATGCAGCAG
tttgtct CT-rich tract
aagatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtattttggagtcatgtgcactgaattggggtatcagtttgtttatttcttacgcttcaaacttcagggaagagtcaactgaatgcccctagttgatgtaatgttgtctcgactcaaacgcagtagatgcaatctattttaagcacttatgtgaagattttgcactcatagaactttcggtttgtctgcagTGGCATGCCTGGTGGACCTCAGCCTCCTGCTTATGGTGGTCAGCATTACATGCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG