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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatatgaacaaatattatgacaatacgggtggtttctgtgaagtgcgcaatgacagtatgcttgtttcagtgaaaaatatttacacgttctattttgcagATTCAAATGGAGGCCCTAATGGCCACATTCAAGGCAGCTTTCTCTGCCACCTGCCTACGCCTATTGAGATTTCGGAGAGTCCTGAAACTTCACCATCTGG

Basic information

species Physcomitrella patens
transcript PP1S22_429V6.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37849883|gb|BJ607891.1|BJ607891
EST:     GTTGAAGAAGAAAGGAAAGTCAAAGAGGCCATCCATCAAGACACTCTTCG                         ATTCAAATGGAGGCCCTAATGGCCACATTCAAGGCAGCTTTCTCTGCCACC
genomic: GTTGAAGAAGAAAGGAAAGTCAAAGAGGCCATCCATCAAGACACTCTTCGgtaaaatact ... tattttgcagATTCAAATGGAGGCCCTAATGGCCACATTCAAGGCAGCTTTCTCTGCCACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcaatgacagtatgcttgtttcagtgaaaaatatttacacgttctattttgcagATTCAAATGGAGGCCCTAATGGCCACATTCAAGGCAGCTTTCTCTGCCACCTGCCTACGCCTATTGAGATTTCGGAGAGTCCTGAAACTTCACCATCTGG
                                          ttctatttt  CT-rich tract
                       agtgaaaaatattta  TA-rich tract