1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...tatgaaaaactcagggtatgagtaatgactggaggtagcaaggcttgctaatagacgtaaatgttttttgaaaactaattctgctgtatatattcaacagTTGGATGACGTCATTGACTTGGTCATACCACGTGGAAGCAACAAGCTAGTTGCGCAGATCAAGGCAACCACGAAGATTCCTGTTCTTGGTCATGCAG
species | Physcomitrella patens |
transcript | PP1S22_40V6.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATCTTATCGGTTTGGTCACTTCTCGGGATGAGATTCCGGACCTTCTTAAG TTGGATGACGTCATTGACTTGGTCATACCACGTGGAAGCAACAAGCTAGTTEST: gi|162191467|gb|FC367171.1|FC367171
genomic: ATCTTATCGGTTTGGTCACTTCTCGGGATGAGATTCCGGACCTTCTTAAGgtatacccac ... tattcaacagTTGGATGACGTCATTGACTTGGTCATACCACGTGGAAGCAACAAGCTAGTT
EST: ATCTTATCGGTTTGGTCACTTCTCGGGATGAGATTCCGGACCTTCTTAAG TTGGATGACGTCATTGACTTGGTCATACCACGTGGAAGCAACAAGCTAGTTEST: gi|162210539|gb|FC386835.1|FC386835
genomic: ATCTTATCGGTTTGGTCACTTCTCGGGATGAGATTCCGGACCTTCTTAAGgtatacccac ... tattcaacagTTGGATGACGTCATTGACTTGGTCATACCACGTGGAAGCAACAAGCTAGTT
EST: ATCTTATCGGTTTGGTCACTTCTCGGGATGAGATTCCGGACCTTCTTAAG TTGGATGACGTCATTGACTTGGTCATACCACGTGGAAGCAACAAGCTAGTTEST: gi|162167791|gb|FC344521.1|FC344521
genomic: ATCTTATCGGTTTGGTCACTTCTCGGGATGAGATTCCGGACCTTCTTAAGgtatacccac ... tattcaacagTTGGATGACGTCATTGACTTGGTCATACCACGTGGAAGCAACAAGCTAGTT
EST: ATCTTATCGGTTTGGTCACTTCTCGGGATGAGATTCCGGACCTTCTTAAG TTGGATGACGTCATTGACTTGGTCATACCACGTGGAAGCAACAAGCTAGTTEST: gi|162235436|gb|FC411571.1|FC411571
genomic: ATCTTATCGGTTTGGTCACTTCTCGGGATGAGATTCCGGACCTTCTTAAGgtatacccac ... tattcaacagTTGGATGACGTCATTGACTTGGTCATACCACGTGGAAGCAACAAGCTAGTT
EST: ATCTTATCGGTTTGGTCACTTCTCGGGATGAGATTCCGGACCTTCTTAAG TTGGATGACGTCATTGACTTGGTCATACCACGTGGAAGCAACAAGCTAGTT
genomic: ATCTTATCGGTTTGGTCACTTCTCGGGATGAGATTCCGGACCTTCTTAAGgtatacccac ... tattcaacagTTGGATGACGTCATTGACTTGGTCATACCACGTGGAAGCAACAAGCTAGTT
tgctaatagacgtaaatgttttttgaaaactaattctgctgtatatattcaacagTTGGATGACGTCATTGACTTGGTCATACCACGTGGAAGCAACAAGCTAGTTGCGCAGATCAAGGCAACCACGAAGATTCCTGTTCTTGGTCATGCAG
aactaat putative branch site (score: 21)
taaatgttttttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgaaaaactcagggtatgagtaatgactggaggtagcaaggcttgctaatagacgtaaatgttttttgaaaactaattctgctgtatatattcaacagTTGGATGACGTCATTGACTTGGTCATACCACGTGGAAGCAACAAGCTAGTTGCGCAGATCAAGGCAACCACGAAGATTCCTGTTCTTGGTCATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgta