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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatatcaaattattacgtgagtggggttcgttctcatcctggttcatcgagcattccactctgttcttttggacattcagatgtgggatactgcgaagaagacagtgactaatgtccgataccttggatgccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTTGACGAGAAGAAAGCTGTACTGGAGTCACTGCTATCTATCAGACGAGCAG

Basic information

species Physcomitrella patens
transcript PP1S219_94V6.4
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208397534|gb|DC916404.1|DC916404
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162270288|gb|FC447300.1|FC447300
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|37823739|gb|BJ581805.1|BJ581805
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162149641|gb|FC325834.1|FC325834
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162179399|gb|FC355399.1|FC355399
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162166750|gb|FC342719.1|FC342719
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162270289|gb|FC447301.1|FC447301
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|37849666|gb|BJ607674.1|BJ607674
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162179007|gb|FC354315.1|FC354315
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162186427|gb|FC362983.1|FC362983
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162166751|gb|FC342720.1|FC342720
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162152577|gb|FC328855.1|FC328855
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162152576|gb|FC328854.1|FC328854
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162166261|gb|FC342854.1|FC342854
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162179008|gb|FC354316.1|FC354316
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|208375459|gb|DC945074.1|DC945074
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|37840646|gb|BJ598654.1|BJ598654
EST:     CATCAGGCTTTTGCGCGACAACACTGCACTACCCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: CATCAGGCTTTTGCGCGACAACACTGCACTA-CCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162192024|gb|FC367237.1|FC367237
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162223272|gb|FC400241.1|FC400241
EST:     GCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCGTGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: GCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162166619|gb|FC343511.1|FC343511
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|208382503|gb|DC923173.1|DC923173
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162150766|gb|FC327038.1|FC327038
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162224661|gb|FC401909.1|FC401909
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|37844930|gb|BJ602938.1|BJ602938
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162280382|gb|FC456087.1|FC456087
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|37840523|gb|BJ598531.1|BJ598531
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|37832459|gb|BJ590471.1|BJ590471
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162156545|gb|FC332153.1|FC332153
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162179121|gb|FC355586.1|FC355586
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|37824580|gb|BJ582646.1|BJ582646
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|67726412|gb|BJ976671.1|BJ976671
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162179122|gb|FC355587.1|FC355587
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162223271|gb|FC400240.1|FC400240
EST:     GCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: GCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|208373778|gb|DC956294.1|DC956294
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|208396900|gb|DC915948.1|DC915948
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162188973|gb|FC364363.1|FC364363
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162224660|gb|FC401908.1|FC401908
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162177007|gb|FC353684.1|FC353684
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|208351166|gb|DC926030.1|DC926030
EST:     TCATCAGGCTTTTGCGCGACAACACTGCANTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGANTAGAGCAGCCGCTGCCGCGGNCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162150767|gb|FC327039.1|FC327039
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|208349261|gb|DC918011.1|DC918011
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162187917|gb|FC364491.1|FC364491
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|18338206|gb|BJ170230.1|BJ170230
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|18340066|gb|BJ172094.1|BJ172094
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|37837729|gb|BJ595737.1|BJ595737
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162175609|gb|FC351001.1|FC351001
EST:     CCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: CCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|37828442|gb|BJ586454.1|BJ586454
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162270867|gb|FC446896.1|FC446896
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|37844931|gb|BJ602939.1|BJ602939
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162190654|gb|FC367540.1|FC367540
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162149669|gb|FC326720.1|FC326720
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|208360647|gb|DC946413.1|DC946413
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162230608|gb|FC406031.1|FC406031
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162156546|gb|FC332154.1|FC332154
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
EST: gi|162157381|gb|FC333483.1|FC333483
EST:     TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAG                         GTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT
genomic: TCATCAGGCTTTTGCGCGACAACACTGCACTACCCATCTCAGCTTATCAGgtacatatca ... gccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggatactgcgaagaagacagtgactaatgtccgataccttggatgccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTTGACGAGAAGAAAGCTGTACTGGAGTCACTGCTATCTATCAGACGAGCAG
                      gactaat  putative branch site (score: 2)
                                              ccttgcc  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
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gtacatatcaaattattacgtgagtggggttcgttctcatcctggttcatcgagcattccactctgttcttttggacattcagatgtgggatactgcgaagaagacagtgactaatgtccgataccttggatgccttgccagGTCTCAGGAGAGTACTCCATGATTAGAGCAGCCGCTGCCGCGGGCATGCTTGACGAGAAGAAAGCTGTACTGGAGTCACTGCTATCTATCAGACGAGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG