1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tctgactgatttaaatgcttttgaatgttcactctaattcttgatttgctcttagaggttatttctaagaaaaatgtggttgactggcgggtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTGGAAGTCTTATGCTACACGTATGCTTTTTCTCAGTTGATTGACAATGCA
species | Physcomitrella patens |
transcript | PP1S209_135V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAA GTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTEST: gi|37824726|gb|BJ582792.1|BJ582792
genomic: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAAgtaagtagcg ... gtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCT
EST: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAA GTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTEST: gi|22491904|gb|BU051827.1|BU051827
genomic: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAAgtaagtagcg ... gtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCT
EST: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAA GTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTEST: gi|162268243|gb|FC444532.1|FC444532
genomic: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAAgtaagtagcg ... gtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCT
EST: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAA GTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCEST: gi|37845352|gb|BJ603360.1|BJ603360
genomic: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAAgtaagtagcg ... gtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGC
EST: ATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAA GTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTEST: gi|37829652|gb|BJ587664.1|BJ587664
genomic: ATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAAgtaagtagcg ... gtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCT
EST: AATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAA GTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTEST: gi|37850885|gb|BJ608893.1|BJ608893
genomic: AATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAAgtaagtagcg ... gtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCT
EST: GGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAA GTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTEST: gi|162242621|gb|FC414999.1|FC414999
genomic: GGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAAgtaagtagcg ... gtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCT
EST: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAA GTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTEST: gi|162242622|gb|FC415000.1|FC415000
genomic: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAAgtaagtagcg ... gtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCT
EST: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAA GTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTEST: gi|67694398|gb|BJ954631.1|BJ954631
genomic: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAAgtaagtagcg ... gtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCT
EST: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAA GTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTEST: gi|37827697|gb|BJ585709.1|BJ585709
genomic: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAAgtaagtagcg ... gtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCT
EST: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAA GTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTEST: gi|162244830|gb|FC420182.1|FC420182
genomic: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAAgtaagtagcg ... gtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCT
EST: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAA GTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTEST: gi|37843464|gb|BJ601472.1|BJ601472
genomic: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAAgtaagtagcg ... gtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCT
EST: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAA GTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTEST: gi|162156562|gb|FC332170.1|FC332170
genomic: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAAgtaagtagcg ... gtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCT
EST: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAA GTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTEST: gi|37850470|gb|BJ608478.1|BJ608478
genomic: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAAgtaagtagcg ... gtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCT
EST: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAA GTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTEST: gi|37843716|gb|BJ601724.1|BJ601724
genomic: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAAgtaagtagcg ... gtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCT
EST: GTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAA GTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTEST: gi|162242620|gb|FC414998.1|FC414998
genomic: GTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAAgtaagtagcg ... gtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCT
EST: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAA GTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTEST: gi|37840267|gb|BJ598275.1|BJ598275
genomic: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAAgtaagtagcg ... gtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCT
EST: TGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAA GTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTEST: gi|162194101|gb|FC370276.1|FC370276
genomic: TGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAAgtaagtagcg ... gtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCT
EST: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAA GTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTEST: gi|162185218|gb|FC361728.1|FC361728
genomic: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAAgtaagtagcg ... gtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCT
EST: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAA GTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTEST: gi|18338931|gb|BJ170957.1|BJ170957
genomic: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAAgtaagtagcg ... gtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCT
EST: CGTGCTCATTGCCAATTGATTCTAGTGTCTAA GTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTEST: gi|162242623|gb|FC415001.1|FC415001
genomic: CGTGCTCATTGCCAATTGATTCTAGTGTCTAAgtaagtagcg ... gtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCT
EST: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAA GTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCT
genomic: GAACTGGTGGAATCAGCTCGTGCTCATTGCCAATTGATTCTAGTGTCTAAgtaagtagcg ... gtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCT
ttgctcttagaggttatttctaagaaaaatgtggttgactggcgggtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTGGAAGTCTTATGCTACACGTATGCTTTTTCTCAGTTGATTGACAATGCA
ggttgac putative branch site (score: 22)
ttatttctaagaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgactgatttaaatgcttttgaatgttcactctaattcttgatttgctcttagaggttatttctaagaaaaatgtggttgactggcgggtttgaccagGTTTATTGAACAATTACAAACTGGAACACCAGAGGGCATTAGGAAGCAGCTGGAAGTCTTATGCTACACGTATGCTTTTTCTCAGTTGATTGACAATGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG