1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tcaatgcgaagaataggatgcttttagtatttgaatgaggggttattgacgtctgtttacgtgttgtttgatctgtattttgcttttgtggtgagcgcagCAACCAAAGGGCAGAGAAGTGGAAGATGATGACATATTTGTCTTCAACGAGGATTTTGTTGCTCCTCTTTTTCGTATTAAG
species | Physcomitrella patens |
transcript | PP1S204_102V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GAAGAACTCTTCAATCATTGGCTTGTGGTAAAGTTCGAGTTCTTAACAAG CAACCAAAGGGCAGAGAAGTGGAAGATGATGACATATTTGTCTTCAACGAGEST: gi|162152351|gb|FC328538.1|FC328538
genomic: GAAGAACTCTTCAATCATTGGCTTGTGGTAAAGTTCGAGTTCTTAACAAGgtattatgca ... gtgagcgcagCAACCAAAGGGCAGAGAAGTGGAAGATGATGACATATTTGTCTTCAACGAG
EST: GAAGAACTCTTCAATCATTGGCTTGTGGTAAAGTTCGAGTTCTTAACAAG CAACCAAAGGGCAGAGAAGTGGAAGATGATGACATATTTGTCTTCAACGAGEST: gi|162263592|gb|FC440102.1|FC440102
genomic: GAAGAACTCTTCAATCATTGGCTTGTGGTAAAGTTCGAGTTCTTAACAAGgtattatgca ... gtgagcgcagCAACCAAAGGGCAGAGAAGTGGAAGATGATGACATATTTGTCTTCAACGAG
EST: GAAGAACTCTTCAATCATTGGCTTGTGGTAAAGTTCGAGTTCTTAACAAG CAACCAAAGGGCAGAGAAGTGGAAGATGATGACATATTTGTCTTCAACGAGEST: gi|162168792|gb|FC344782.1|FC344782
genomic: GAAGAACTCTTCAATCATTGGCTTGTGGTAAAGTTCGAGTTCTTAACAAGgtattatgca ... gtgagcgcagCAACCAAAGGGCAGAGAAGTGGAAGATGATGACATATTTGTCTTCAACGAG
EST: GAAGAACTCTTCAATCATTGGCTTGTGGTAAAGTTCGAGTTCTTAACAAG CAACCAAAGGGCAGAGAAGTGGAAGATGATGACATATTTGTCTTCAACGAGEST: gi|162226810|gb|FC403830.1|FC403830
genomic: GAAGAACTCTTCAATCATTGGCTTGTGGTAAAGTTCGAGTTCTTAACAAGgtattatgca ... gtgagcgcagCAACCAAAGGGCAGAGAAGTGGAAGATGATGACATATTTGTCTTCAACGAG
EST: GAAGAACTCTTCAATCATTGGCTTGTGGTAAAGTTCGAGTTCTTAACAAG CAACCAAAGGGCAGAGAAGTGGAAGATGATGACATATTTGTCTTCAACGAG
genomic: GAAGAACTCTTCAATCATTGGCTTGTGGTAAAGTTCGAGTTCTTAACAAGgtattatgca ... gtgagcgcagCAACCAAAGGGCAGAGAAGTGGAAGATGATGACATATTTGTCTTCAACGAG
ttgacgtctgtttacgtgttgtttgatctgtattttgcttttgtggtgagcgcagCAACCAAAGGGCAGAGAAGTGGAAGATGATGACATATTTGTCTTCAACGAGGATTTTGTTGCTCCTCTTTTTCGTATTAAG
tgtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatgcgaagaataggatgcttttagtatttgaatgaggggttattgacgtctgtttacgtgttgtttgatctgtattttgcttttgtggtgagcgcagCAACCAAAGGGCAGAGAAGTGGAAGATGATGACATATTTGTCTTCAACGAGGATTTTGTTGCTCCTCTTTTTCGTATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC