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gtaagtttcccatcttgctgctatcatacagaaatttcatatccgactttagaatgtgttttgtgtcaatcctgtaattcccttcttgtgaattaaaggaattattttctgtttgatgtgcatagGCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAAGGAAGCGATGTACATGAAGCTCACG
species | Physcomitrella patens |
transcript | PP1S192_39V6.4 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGCTGAAATCCGCGTGCAGTTTAAGGACGCTCCTGGTGATATTTTTAAGT GCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAAGGAAGEST: gi|37821380|gb|BJ579446.1|BJ579446
genomic: AGCTGAAATCCGTGTGCAGTTTAAGGACGCTCCTGGTGATATTTTTAAGTgtaagtttcc ... atgtgcatagGCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAAGGAAG
EST: AGCTGAAATCCGTGTGCAGTTTAAGGACGCTCCTGGTGATATTTTTAAGT GCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAAGGAAGEST: gi|37842189|gb|BJ600197.1|BJ600197
genomic: AGCTGAAATCCGTGTGCAGTTTAAGGACGCTCCTGGTGATATTTTTAAGTgtaagtttcc ... atgtgcatagGCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAAGGAAG
EST: AGCTGAAATCCGTGTGCAGTTTAAGGACGCTCCTGGTGATATTTTTAAGT GCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAAGGAAGEST: gi|37851014|gb|BJ609022.1|BJ609022
genomic: AGCTGAAATCCGTGTGCAGTTTAAGGACGCTCCTGGTGATATTTTTAAGTgtaagtttcc ... atgtgcatagGCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAAGGAAG
EST: AGCTGAAATCCGTGTGCAGTTTAAGGACGCTCCTGGTGATATTTTTAAGT GCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAAGGAAGEST: gi|37841660|gb|BJ599668.1|BJ599668
genomic: AGCTGAAATCCGTGTGCAGTTTAAGGACGCTCCTGGTGATATTTTTAAGTgtaagtttcc ... atgtgcatagGCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAAGGAAG
EST: AGCTGAAATCCGTGTGCAGTTTAAGGACGCTCCTGGTGATATTTTTAAGT GCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAAGGAAGEST: gi|208381262|gb|DC919152.1|DC919152
genomic: AGCTGAAATCCGTGTGCAGTTTAAGGACGCTCCTGGTGATATTTTTAAGTgtaagtttcc ... atgtgcatagGCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAAGGAAG
EST: AGCTGAAATCCGTGTGCAGTTTAAGGACGCTCCTGGTGATATTTTTAAGT GCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAAGGAAGEST: gi|162173094|gb|FC349200.1|FC349200
genomic: AGCTGAAATCCGTGTGCAGTTTAAGGACGCTCCTGGTGATATTTTTAAGTgtaagtttcc ... atgtgcatagGCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAAGGAAG
EST: AGCTGAAATCCGTGTGCAGTTTAAGGACGCTCCTGGTGATATTTTTAAGT GCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAAGGAAGEST: gi|37850441|gb|BJ608449.1|BJ608449
genomic: AGCTGAAATCCGTGTGCAGTTTAAGGACGCTCCTGGTGATATTTTTAAGTgtaagtttcc ... atgtgcatagGCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAAGGAAG
EST: AGCTGAAATCCGTGTGCAGTTTAAGGACGCTCCTGGTGATATTTTTAAGT GCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAAGGAAGEST: gi|37843663|gb|BJ601671.1|BJ601671
genomic: AGCTGAAATCCGTGTGCAGTTTAAGGACGCTCCTGGTGATATTTTTAAGTgtaagtttcc ... atgtgcatagGCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAAGGAAG
EST: TATTTTTAAGT GCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAAGGGAAEST: gi|162279045|gb|FC455072.1|FC455072
genomic: TATTTTTAAGTgtaagtttcc ... atgtgcatagGCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAA-GGAA
EST: AGCTGAAATCCGTGTGCAGTTTAAGGACGCTCCTGGTGATATTTTTAAGT GCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAAGGAAG
genomic: AGCTGAAATCCGTGTGCAGTTTAAGGACGCTCCTGGTGATATTTTTAAGTgtaagtttcc ... atgtgcatagGCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAAGGAAG
cctgtaattcccttcttgtgaattaaaggaattattttctgtttgatgtgcatagGCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAAGGAAGCGATGTACATGAAGCTCACG
gtttgat putative branch site (score: 5)
aattaaaggaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttcccatcttgctgctatcatacagaaatttcatatccgactttagaatgtgttttgtgtcaatcctgtaattcccttcttgtgaattaaaggaattattttctgtttgatgtgcatagGCAAAAAGCAGGGTCGTAATGAATTTGTGATGCGTCTGCAACCAAAGGAAGCGATGTACATGAAGCTCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA