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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccactgcgctgaaagcgtacaaagatcctcaaggattggtcagggagtgtatcagaacagcaaatttgttcctaacttggctgctgcttggcttttgtagGTACCCTTCGAGTTGCTAGTGCGCCGACAGATTGCTCGATTATTGGAGCCTAGTCTACAGTGTGCTCGCTTCATTTACGACGAACTTGTGAAG

Basic information

species Physcomitrella patens
transcript PP1S187_100V6.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162149763|gb|FC325878.1|FC325878
EST:     CAGCTATACAAAATGCTACCGGGCCCAAGAATGTACTTTTTGTACCCGAG                         GTACCCTTCGAGTTGCTAGTGCGCCGACAGATTGCTCGATTATTGGAGCCT
genomic: CAGCTATACAAAATGCTACCGGGCCCAAGAATGTACTTTTTGTACCCGAGgtatgactac ... gcttttgtagGTACCCTTCGAGTTGCTAGTGCGCCGACAGATTGCTCGATTATTGGAGCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgtatcagaacagcaaatttgttcctaacttggctgctgcttggcttttgtagGTACCCTTCGAGTTGCTAGTGCGCCGACAGATTGCTCGATTATTGGAGCCTAGTCTACAGTGTGCTCGCTTCATTTACGACGAACTTGTGAAG
                        tcctaac  putative branch site (score: 1)
                                              cttttgt  putative PPT
                aaatttgtt  TA-rich tract