1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtgtggcttgagatggcgtgttggctgctgttgtacaatatggattgtaatttcatttacttctaaaacaaaccggatcaactagccctcaactaactggctgaactgaccttgagttctggcagGTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAG
species | Physcomitrella patens |
transcript | PP1S179_27V6.3 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTGGTGCTCGAGAGACAGCCTANAAAGCATTTTCAAGAGGACTCTGCCAG GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAGEST: gi|18325669|gb|BJ157666.1|BJ157666
genomic: TTGGTGCTCGAGAGACAGCCTAAAAAGCATTTTCAAGAGGACTCTGCCAGgtgtggcttg ... gttctggcagGTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAG
EST: GACAGCCTAAAAAGCATTTTCAAGAGGACTCTGCCAG GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAGEST: gi|100375508|gb|BY948893.1|BY948893
genomic: GACAGCCTAAAAAGCATTTTCAAGAGGACTCTGCCAGgtgtggcttg ... gttctggcagGTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAG
EST: TTGGTGCTCGAGAGACAGCCTAAAAAGCATTTTCAAGAGGACTCTGCCAG GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAGEST: gi|162166374|gb|FC342356.1|FC342356
genomic: TTGGTGCTCGAGAGACAGCCTAAAAAGCATTTTCAAGAGGACTCTGCCAGgtgtggcttg ... gttctggcagGTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAG
EST: TTGGTGCTCGAGAGACAGCCTAAAAAGCATTTTCAAGAGGACTCTGCCAG GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAGEST: gi|162198645|gb|FC374791.1|FC374791
genomic: TTGGTGCTCGAGAGACAGCCTAAAAAGCATTTTCAAGAGGACTCTGCCAGgtgtggcttg ... gttctggcagGTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAG
EST: TTGGTGCTCGAGAGACAGCCTAAAAAGCATTTTCAAGAGGACTCTGCCAG GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAGEST: gi|162197657|gb|FC374491.1|FC374491
genomic: TTGGTGCTCGAGAGACAGCCTAAAAAGCATTTTCAAGAGGACTCTGCCAGgtgtggcttg ... gttctggcagGTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAG
EST: TTGGTGCTCGAGAGACAGCCTAAAAAGCATTTTCAAGAGGACTCTGCCAG GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAGEST: gi|162164217|gb|FC342032.1|FC342032
genomic: TTGGTGCTCGAGAGACAGCCTAAAAAGCATTTTCAAGAGGACTCTGCCAGgtgtggcttg ... gttctggcagGTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAG
EST: GGACTCTGCCAG GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAGEST: gi|162199450|gb|FC373765.1|FC373765
genomic: GGACTCTGCCAGgtgtggcttg ... gttctggcagGTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAG
EST: TTGGTGCTCGAGAGACAGCCTAAAAAGCATTTTCAAGAGGACTCTGCCAG GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAGEST: gi|162150868|gb|FC327348.1|FC327348
genomic: TTGGTGCTCGAGAGACAGCCTAAAAAGCATTTTCAAGAGGACTCTGCCAGgtgtggcttg ... gttctggcagGTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAG
EST: TTGGTGCTCGAGAGACAGCCTAAAAAGCATTTTCAAGAGGACTCTGCCAG GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAG
genomic: TTGGTGCTCGAGAGACAGCCTAAAAAGCATTTTCAAGAGGACTCTGCCAGgtgtggcttg ... gttctggcagGTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtggcttgagatggcgtgttggctgctgttgtacaatatggattgtaatttcatttacttctaaaacaaaccggatcaactagccctcaactaactggctgaactgaccttgagttctggcagGTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT