1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgcttattactaatattgattagtcttcttcaacgacaagaagaatagtgtacttacgctattgtatattgctcttgtttatggaagacgtattcattgctggcttatcattggtttttgtttatcttggttcagTGTAACGAGGACTTACTTCGAGAACCTGGTTCGTGCGCTGGAGAGTAATCTTTCGGATGTTGACATTTCGAAAGGAGCCGTCAAGTCCAGCAACAGCTCA
species | Physcomitrella patens |
transcript | PP1S178_72V6.3 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CCCAATAGCTCATTCAATGATTTCCGCACCAAACTTGCCGGCTTGACCAG TGTAACGAGGACTTACTTCGAGAACCTGGTTCGTGCGCTGGAGAGTAATCTEST: gi|162225839|gb|FC402131.1|FC402131
genomic: CCCAATAGCTCATTCAATGATTTCCGCACCAAACTTGCCGGCTTGACCAGgtgcttatta ... cttggttcagTGTAACGAGGACTTACTTCGAGAACCTGGTTCGTGCGCTGGAGAGTAATCT
EST: CCCAATAGCTCATTCAATGATTTCCGCACCAAACTTGCCGGCTTGACCAG TGTAACGAGGACTTACTTCGAGAACCTGGTTCGTGCGCTGGAGAGTAATCTEST: gi|162256281|gb|FC432187.1|FC432187
genomic: CCCAATAGCTCATTCAATGATTTCCGCACCAAACTTGCCGGCTTGACCAGgtgcttatta ... cttggttcagTGTAACGAGGACTTACTTCGAGAACCTGGTTCGTGCGCTGGAGAGTAATCT
EST: CCCAATAGCTCATTCAATGATTTCCGCACCAAACTTGCCGGCTTGACCAG TGTAACGAGGACTTACTTCGAGAACCTGGTTCGTGCGCTGGAGAGTAATCT
genomic: CCCAATAGCTCATTCAATGATTTCCGCACCAAACTTGCCGGCTTGACCAGgtgcttatta ... cttggttcagTGTAACGAGGACTTACTTCGAGAACCTGGTTCGTGCGCTGGAGAGTAATCT
atggaagacgtattcattgctggcttatcattggtttttgtttatcttggttcagTGTAACGAGGACTTACTTCGAGAACCTGGTTCGTGCGCTGGAGAGTAATCTTTCGGATGTTGACATTTCGAAAGGAGCCGTCAAGTCCAGCAACAGCTCA
tttttgtttatctt CT-rich tract
tttttgtttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttattactaatattgattagtcttcttcaacgacaagaagaatagtgtacttacgctattgtatattgctcttgtttatggaagacgtattcattgctggcttatcattggtttttgtttatcttggttcagTGTAACGAGGACTTACTTCGAGAACCTGGTTCGTGCGCTGGAGAGTAATCTTTCGGATGTTGACATTTCGAAAGGAGCCGTCAAGTCCAGCAACAGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA