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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatttgaatcgaaataaatgtccctcttgccatcttacaaattgacccacacctgtgctagacattcaggattttagctgttgaatataattagttggattttcacagctctcgtgaagctattgctgtgcatactggtttgttatcacatctgacgagtgttatatgtttgtgcgcagGGATCTCCTTTAAGGAAAGATAGTCGGAGTCCTAGCTTGAGTCGATCGAAGTCTCCAGTTGCTGTG

Basic information

species Physcomitrella patens
transcript PP1S173_12V6.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37848698|gb|BJ606706.1|BJ606706
EST:     GTCAAGATCACCCTCCCCTGTACAG                         GGATCTCCTTTAAGGAAAGATAGTCGGAGTCCTAGCTTGAGTCGATCGAAG
genomic: GTCAAGATCACCCTCCCCTGTACAGgtgaatttga ... ttgtgcgcagGGATCTCCTTTAAGGAAAGATAGTCGGAGTCCTAGCTTGAGTCGATCGAAG
EST: gi|67698067|gb|BJ958300.1|BJ958300
EST:     GTCAAGATCACCCTCCCCTGTACAG                         GGATCTCCTTTAAGGAAAGATAGTCGGAGTCCTAGCTTGAGTCGATCGAAG
genomic: GTCAAGATCACCCTCCCCTGTACAGgtgaatttga ... ttgtgcgcagGGATCTCCTTTAAGGAAAGATAGTCGGAGTCCTAGCTTGAGTCGATCGAAG
EST: gi|208353229|gb|DC926154.1|DC926154
EST:     GTCAAGATCACCCTCCCCTGTACAG                         GGATCTCCTTTAAGGAAAGATAGTCGGAGTCCTAGCTTGAGTCGATCGAAG
genomic: GTCAAGATCACCCTCCCCTGTACAGgtgaatttga ... ttgtgcgcagGGATCTCCTTTAAGGAAAGATAGTCGGAGTCCTAGCTTGAGTCGATCGAAG
EST: gi|67691349|gb|BJ951582.1|BJ951582
EST:     GTCAAGATCACCCTCCCCTGTACAG                         GGATCTCCTTTAAGGAAAGATAGTCGGAGTCCTAGCTTGAGTCGATCGAAG
genomic: GTCAAGATCACCCTCCCCTGTACAGgtgaatttga ... ttgtgcgcagGGATCTCCTTTAAGGAAAGATAGTCGGAGTCCTAGCTTGAGTCGATCGAAG
EST: gi|37840111|gb|BJ598119.1|BJ598119
EST:     GTCAAGATCACCCTCCCCTGTACAG                         GGATCTCCTTTAAGGAAAGATAGTCGGAGTCCTAGCTTGAGTCGATCGAAG
genomic: GTCAAGATCACCCTCCCCTGTACAGgtgaatttga ... ttgtgcgcagGGATCTCCTTTAAGGAAAGATAGTCGGAGTCCTAGCTTGAGTCGATCGAAG
EST: gi|37846921|gb|BJ604929.1|BJ604929
EST:     GTCAAGATCACCCTCCCCTGTACAG                         GGATCTCCTTTAAGGAAAGATAGTCGGAGTCCTAGCTTGAGTCGATCGAAG
genomic: GTCAAGATCACCCTCCCCTGTACAGgtgaatttga ... ttgtgcgcagGGATCTCCTTTAAGGAAAGATAGTCGGAGTCCTAGCTTGAGTCGATCGAAG
EST: gi|37845069|gb|BJ603077.1|BJ603077
EST:     GTCAAGATCACCCTCCCCTGTACAG                         GGATCTCCTTTAAGGAAAGATAGTCGGAGTCCTAGCTTGAGTCGATCGAAG
genomic: GTCAAGATCACCCTCCCCTGTACAGgtgaatttga ... ttgtgcgcagGGATCTCCTTTAAGGAAAGATAGTCGGAGTCCTAGCTTGAGTCGATCGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgtgcatactggtttgttatcacatctgacgagtgttatatgtttgtgcgcagGGATCTCCTTTAAGGAAAGATAGTCGGAGTCCTAGCTTGAGTCGATCGAAGTCTCCAGTTGCTGTG
                         atctgac  putative branch site (score: 3)
                                     ttatatgttt  TA-rich tract