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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgactttcttattttcacttaaaccatatctttcgacccttaagttgtgaaatgtattagtaatgcctatgagcttatctttcttgtgtaaagaacttagcaagtacttagaggctatgttccaataagtgaggttttcttgtctgaagTTCACTCAGGGTGGTGATGCAAAGGACTCAAACCAAGCCACGCTAATGGTCATTACTATCATCATTGTCCTCTTCAGCACTATT

Basic information

species Physcomitrella patens
transcript PP1S169_48V6.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162176886|gb|FC353368.1|FC353368
EST:     GGGCTGGACTAATGCGAGGTGCTGTCTCAATAGCACTGGCGTTCAACCAG                         TTCACTCAGGGTGGTGATGCAAAGGACTCAAACCAAGCCACGCTAATGGTC
genomic: GGGCTGGACTAATGCGAGGTGCTGTCTCAATAGCACTGGCGTTCAACCAGgtgactttct ... ttgtctgaagTTCACTCAGGGTGGTGATGCAAAGGACTCAAACCAAGCCACGCTAATGGTC
EST: gi|162176885|gb|FC353367.1|FC353367
EST:     GGGCTGGACTAATGCGAGGTGCTGTCTCAATAGCACTGGCGTTCAACCAG                         TTCACTCAGGGTGGTGATGCAAAGGACTCAAACCAAGCCACGCTAATGGTC
genomic: GGGCTGGACTAATGCGAGGTGCTGTCTCAATAGCACTGGCGTTCAACCAGgtgactttct ... ttgtctgaagTTCACTCAGGGTGGTGATGCAAAGGACTCAAACCAAGCCACGCTAATGGTC
EST: gi|162255348|gb|FC432074.1|FC432074
EST:     GGGCTGGACTAATGCGAGGTGCTGTCTCAATAGCACTGGCGTTCAACCAG                         TTCACTCAGGGTGGTGATGCAAAGGACTCAAACCAAGCCACGCTAATGGTC
genomic: GGGCTGGACTAATGCGAGGTGCTGTCTCAATAGCACTGGCGTTCAACCAGgtgactttct ... ttgtctgaagTTCACTCAGGGTGGTGATGCAAAGGACTCAAACCAAGCCACGCTAATGGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttagcaagtacttagaggctatgttccaataagtgaggttttcttgtctgaagTTCACTCAGGGTGGTGATGCAAAGGACTCAAACCAAGCCACGCTAATGGTCATTACTATCATCATTGTCCTCTTCAGCACTATT
                                        ttttcttgtct  CT-rich tract
                             aataagt  TA-rich tract