1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaatactcgagctcatgttttcgctgtctactatgattaggcggtttcatttatgttgctaacttatatgttcacagtctacagaaattttatttatgtttgcagagacaacacgtggattcttgtacatgtcgatttcttattatgtcgtttatggatctaaactgatcctaatttttgtattgtacgtagTCATCTGCTCCTGTGGCGCTAACAGAAGAAGAAACAGAGTATGCTGTGAATGTTGTCAAGCATGTGTATCCTGGTCACGTTGTCTTACAGTTCAACTGCA
species | Physcomitrella patens |
transcript | PP1S15_298V6.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AACTACTCAATTCAATCCCTATGTTTGCAGGTTTTGGAAAACTCTTTAAG TCATCTGCTCCTGTGGCGCTNACAGAAGAAGAAACAGAGTATGCTGTGAATEST: gi|162150207|gb|FC326292.1|FC326292
genomic: AACTACTCAATTCAATCCCTATGTTTGCAGGTTTTGGAAAACTCTTTAAGgtaatactcg ... ttgtacgtagTCATCTGCTCCTGTGGCGCTAACAGAAGAAGAAACAGAGTATGCTGTGAAT
EST: AACTACTCAATTCAATCCCTATGTTTGCAGGTTTTGGAAAACTCTTTAAG TCATCTGCTCCTGTGGCGCTAACAGAAGAAGAAACAGAGTATGCTGTGAATEST: gi|161984098|gb|EE296401.1|EE296401
genomic: AACTACTCAATTCAATCCCTATGTTTGCAGGTTTTGGAAAACTCTTTAAGgtaatactcg ... ttgtacgtagTCATCTGCTCCTGTGGCGCTAACAGAAGAAGAAACAGAGTATGCTGTGAAT
EST: AACTACTCAATTCAATCCCTATGTTTGCAGGTTTTGGAAAACTCTTTAAG TCATCTGCTCCTGTGGCACTAACAGAAGAAGAAACAGAGTATGCTGTGAATEST: gi|162270704|gb|FC446317.1|FC446317
genomic: AACTACTCAATTCAATCCCTATGTTTGCAGGTTTTGGAAAACTCTTTAAGgtaatactcg ... ttgtacgtagTCATCTGCTCCTGTGGCGCTAACAGAAGAAGAAACAGAGTATGCTGTGAAT
EST: AACTACTCAATTCAATCCCTATGTTTGCAGGTTTTGGAAAACTCTTTAAG TCATCTGCTCCTGTGGCGCTNACAGAAGAAGAAACAGAGTATGCTGTGAAT
genomic: AACTACTCAATTCAATCCCTATGTTTGCAGGTTTTGGAAAACTCTTTAAGgtaatactcg ... ttgtacgtagTCATCTGCTCCTGTGGCGCTAACAGAAGAAGAAACAGAGTATGCTGTGAAT
tcttattatgtcgtttatggatctaaactgatcctaatttttgtattgtacgtagTCATCTGCTCCTGTGGCGCTAACAGAAGAAGAAACAGAGTATGCTGTGAATGTTGTCAAGCATGTGTATCCTGGTCACGTTGTCTTACAGTTCAACTGCA
tcctaat putative branch site (score: 5)
taatttttgtattgta TA-rich tract