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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttgtgtacaatcttctgccagcgactttggcaaccctcgtagttgggattacagtttatacatagttcatttatgtctgttaatgttgtatggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGAAACGACATTGTTGTCAAGCCCATGATGTATGTGGCCCTCACCTACGACC

Basic information

species Physcomitrella patens
transcript PP1S154_6V6.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162188817|gb|FC364831.1|FC364831
EST:     ATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: ATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|18340511|gb|BJ172539.1|BJ172539
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|37822581|gb|BJ580647.1|BJ580647
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|208368131|gb|DC947691.1|DC947691
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|162173629|gb|FC349597.1|FC349597
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|162195145|gb|FC368820.1|FC368820
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|37853268|gb|BJ611276.1|BJ611276
EST:     TGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: TGGCGTCTATGGGAGTCTCATCAGCACTCCCATTA-TTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|162190098|gb|FC366672.1|FC366672
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|162163853|gb|FC340075.1|FC340075
EST:     TATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: TATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|162156509|gb|FC332117.1|FC332117
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|18337155|gb|BJ169179.1|BJ169179
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|37853494|gb|BJ611502.1|BJ611502
EST:     GTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|37834338|gb|BJ592350.1|BJ592350
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|162188818|gb|FC364832.1|FC364832
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|37843401|gb|BJ601409.1|BJ601409
EST:     TGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: TGGCGTCTATGGGAGTCTCATCAGCACTCCCATTA-TTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|37830298|gb|BJ588310.1|BJ588310
EST:     GTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|162163854|gb|FC340076.1|FC340076
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|67724548|gb|BJ974807.1|BJ974807
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|208360677|gb|DC946429.1|DC946429
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|37826547|gb|BJ584559.1|BJ584559
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
EST: gi|37848492|gb|BJ606500.1|BJ606500
EST:     GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAG                         TCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA
genomic: GTGGCGTCTATGGGAGTCTCATCAGCACTCCCATTATTAACCCACCACAGgtaagtccag ... atggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggattacagtttatacatagttcatttatgtctgttaatgttgtatggatgcagTCGGCAATTCTGGGAATGCACTCGATCCAAAAGCGCCCTGTGGTAGCAGGAAACGACATTGTTGTCAAGCCCATGATGTATGTGGCCCTCACCTACGACC
                                 tgttaat  putative branch site (score: 3)
          tttatacata  TA-rich tract