1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatgaaaattttacccctacgatcgtatcatgtagagatttgtagtggatgttggcgtattttccttgatgtgtctttccaaacaatatgcatccttcttctaaggaagtgaaaccattccttcacttgccgtcttatccaggtctaggttttctgatccttactttctgaattgcatccacagCCCAACAGCTGTTTTGTGGACGATGTGGACGGGCAGTCGGTCCCAGCTCTAACCATTCAACTGTACCACATTCAGCGCTCCGAAAAAGCCCCCTTGTAAT
species | Physcomitrella patens |
transcript | PP1S153_98V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CCGCACCTACTTCCCCTCGGCTCTAGCTCTATGTTTACCTCGTTCTCCTG CCCAACAGCTGTTTTGTGGACGATGTGGACGGGCAGTCGGTCCCAGCTCTAEST: gi|37825983|gb|BJ584049.1|BJ584049
genomic: CCGCACCTACTTCCCCTCGGCTCTAGCTCTATGTTTACCTCGTTCTCCTGgtatgaaaat ... gcatccacagCCCAACAGCTGTTTTGTGGACGATGTGGACGGGCAGTCGGTCCCAGCTCTA
EST: CCGCACCTACTTCCCCTCGGCTCTAGCTCTATGTTTACCTCGTTCTCCTG CCCAACAGCTGTTTTGTGGACGATGTGGACGGGCAGTCGGTCCCAGCTCTAEST: gi|37827148|gb|BJ585160.1|BJ585160
genomic: CCGCACCTACTTCCCCTCGGCTCTAGCTCTATGTTTACCTCGTTCTCCTGgtatgaaaat ... gcatccacagCCCAACAGCTGTTTTGTGGACGATGTGGACGGGCAGTCGGTCCCAGCTCTA
EST: CCGCACCTACTTCCCCTCGGCTCTAGCTCTATGTTTACCTCGTTCTCCTG CCCAACAGCTGTTTTGTGGACGATGTGGACGGGCAGTCGGTCCCAGCTCTAEST: gi|37835812|gb|BJ593824.1|BJ593824
genomic: CCGCACCTACTTCCCCTCGGCTCTAGCTCTATGTTTACCTCGTTCTCCTGgtatgaaaat ... gcatccacagCCCAACAGCTGTTTTGTGGACGATGTGGACGGGCAGTCGGTCCCAGCTCTA
EST: CCGCACCTACTTCCCCTCGGCTCTAGCTCTATGTTTACCTCGTTCTCCTG CCCAACAGCTGTTTTGTGGACGATGTGGACGGGCAGTCGGTCCCAGCTCTAEST: gi|37824780|gb|BJ582846.1|BJ582846
genomic: CCGCACCTACTTCCCCTCGGCTCTAGCTCTATGTTTACCTCGTTCTCCTGgtatgaaaat ... gcatccacagCCCAACAGCTGTTTTGTGGACGATGTGGACGGGCAGTCGGTCCCAGCTCTA
EST: CCGCACCTACTTCCCCTCGGCTCTAGCTCTATGTTTACCTCGTTCTCCTG CCCAACAGCTGTTTTGTGGACGATGTGGACGGGCAGTCGGTCCCAGCTCTAEST: gi|37832845|gb|BJ590857.1|BJ590857
genomic: CCGCACCTACTTCCCCTCGGCTCTAGCTCTATGTTTACCTCGTTCTCCTGgtatgaaaat ... gcatccacagCCCAACAGCTGTTTTGTGGACGATGTGGACGGGCAGTCGGTCCCAGCTCTA
EST: CCGCACCTACTTCCCCTCGGCTCTAGCTCTATGTTTACCTCGTTCTCCTG CCCAACAGCTGTTTTGTGGACGATGTGGACGGGCAGTCGGTCCCAGCTCTAEST: gi|37833732|gb|BJ591744.1|BJ591744
genomic: CCGCACCTACTTCCCCTCGGCTCTAGCTCTATGTTTACCTCGTTCTCCTGgtatgaaaat ... gcatccacagCCCAACAGCTGTTTTGTGGACGATGTGGACGGGCAGTCGGTCCCAGCTCTA
EST: CCGCACCTACTTCCCCTCGGCTCTAGCTCTATGTTTACCTCGTTCTCCTG CCCAACAGCTGTTTTGTGGACGATGTGGACGGGCAGTCGGTCCCAGCTCTA
genomic: CCGCACCTACTTCCCCTCGGCTCTAGCTCTATGTTTACCTCGTTCTCCTGgtatgaaaat ... gcatccacagCCCAACAGCTGTTTTGTGGACGATGTGGACGGGCAGTCGGTCCCAGCTCTA
ccgtcttatccaggtctaggttttctgatccttactttctgaattgcatccacagCCCAACAGCTGTTTTGTGGACGATGTGGACGGGCAGTCGGTCCCAGCTCTAACCATTCAACTGTACCACATTCAGCGCTCCGAAAAAGCCCCCTTGTAAT
tccttac putative branch site (score: 1)
ttacttt TA-rich tract