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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattactttggttgcatggtttccactttgctttgttctcacgaggcctaattcttgctcgtagatagctggctttagtttacctgggcttgcttgttaataaacttattgaaggtctgtttttggtgtgattccagTGAGAAGGACTTTGCAGAGAATCTGATGATTGTAGATCTTCTGAGGAATGACCTTGGACGAGTTTCGGAACCAGGTTCTGTGCATGTGCCCAGCCTCATG

Basic information

species Physcomitrella patens
transcript PP1S149_275V6.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S149_275V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: Vv13s0019g04170.t01 (Vitis vinifera), 3'ss of exon 12
gtatgattactttggttgcatggtttccactttgctttgttctcacgaggcctaattctt---gctcgtagatagctggctttagtttacctgggcttgcttgttaataaacttattgaaggtctgtttttggtgtgattccagTGAGAAGGACTTTGCAGAGAATCTGATGATTGTAGATCTTCTGAGGAATGACCTTGGACGAGTTTCGGAACCAGGTTCTGTGCATGTGCCCAGCCTCATG
                                | |     ||| | || | | |  | ||   |  |  | |||      ||||            |||| ||  | |||||| | |     ||| ||  |          |||||| || ||    || || |||||||||||||| |||||||| || ||||||||||| || || |  ||||| || ||| | ||||| ||  | || |||
--------------------------------tacaaatatctaatgaagacaatgtttttgagtccaaaaataataatttttaaagcctaatatgttgcctgcca-taaactaactc----tctcttcctcaa-------cagTGAAAAAGATCAGGCTGAAAATCTGATGATTGTTGATCTTCTAAGAAATGACCTTGGTCGTGTCTGTGAACCTGGATCTATTCATGTTCCTTGTCTTATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162197028|gb|FC373368.1|FC373368
EST:     GGAAGCTCACCAGCTGAAGATGAAAGACTCCGTTATGAGCTGCAACACAG                         TGAGAAGGACTTTGCAGAGAATCTGATGATTGTAGATCTTCTGAGGAATGA
genomic: GGAAGCTCACCAGCTGAAGATGAAAGACTCCGTTATGAGCTGCAACACAGgtatgattac ... gtgattccagTGAGAAGGACTTTGCAGAGAATCTGATGATTGTAGATCTTCTGAGGAATGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgggcttgcttgttaataaacttattgaaggtctgtttttggtgtgattccagTGAGAAGGACTTTGCAGAGAATCTGATGATTGTAGATCTTCTGAGGAATGACCTTGGACGAGTTTCGGAACCAGGTTCTGTGCATGTGCCCAGCCTCATG
            tgttaat  putative branch site (score: 3)
           ttgttaataaacttat  TA-rich tract