1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttgctggtcatgtcagatgtattgcttacttttcagcaggtcttgtcgtttaggacctattgaaaaagttcctgactcatttgtgttcttttgcttgcagGGAGGCCCGACAATTGGTGCTGAGCTTGGTTTTGTCTATTTCGGACCAGGAAATCATTTTCTTGTATTGTTTGGTAGACTCAGACTGAAATGTTGAGTGC
species | Physcomitrella patens |
transcript | PP1S144_87V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTAAAAATCCTCAATGGGTGGATGGTGAACTTGTCTTTCTAAATGGCAAG GGAGGCCCGACAATTGGTGCTGAGCTTGGTTTTGTCTATTTCGGACCAGGAEST: gi|162226002|gb|FC401306.1|FC401306
genomic: TTAAAAATCCTCAATGGGTGGATGGTGAACTTGTCTTTCTAAATGGCAAGgtgtgtgcac ... ttgcttgcagGGAGGCCCGACAATTGGTGCTGAGCTTGGTTTTGTCTATTTCGGACCAGGA
EST: TTAAAAATCCTCAATGGGTGGATGGTGAACTTGTCTTTCTAAATGGCAAG GGAGGCCCGACAATTGGTGCTGAGCTTGGTTTTGTCTATTTCGGACCAGGAEST: gi|162180514|gb|FC356156.1|FC356156
genomic: TTAAAAATCCTCAATGGGTGGATGGTGAACTTGTCTTTCTAAATGGCAAGgtgtgtgcac ... ttgcttgcagGGAGGCCCGACAATTGGTGCTGAGCTTGGTTTTGTCTATTTCGGACCAGGA
EST: TTAAAAATCCTCAATGGGTGGATGGTGAACTTGTCTTTCTAAATGGCAAG GGAGGCCCGACAATTGGTGCTGAGCTTGGTTTTGTCTATTTCGGACCAGGA
genomic: TTAAAAATCCTCAATGGGTGGATGGTGAACTTGTCTTTCTAAATGGCAAGgtgtgtgcac ... ttgcttgcagGGAGGCCCGACAATTGGTGCTGAGCTTGGTTTTGTCTATTTCGGACCAGGA
tcgtttaggacctattgaaaaagttcctgactcatttgtgttcttttgcttgcagGGAGGCCCGACAATTGGTGCTGAGCTTGGTTTTGTCTATTTCGGACCAGGAAATCATTTTCTTGTATTGTTTGGTAGACTCAGACTGAAATGTTGAGTGC
tcctgac putative branch site (score: 3)
ttcttttgctt putative PPT
tattgaaaaa TA-rich tract