1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgtgaatactctggtcaaacgcttcaacgtcagtggacctttcgtgacacttgttgaaagttaacaaggcatggatagtccactagctttctttaaactattatgtttatttgcggttacggtaatcgttgatcccacatgtgtgttactagACGAAATGCAACCCCACCGTCGAGACTTTCAAGTCAGCTGGTCAACATTGCTCGAGGCTGTTGCGACAACCGACGAG
species | Physcomitrella patens |
transcript | PP1S138_11V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACTGGAGGTGAGGTGTCTTCAATTTTGGAAGCCAGCAAAAGTCCCAACAG ACGAAATGCAACCCCACCGTCGAGACTTTCAAGTCAGCTGGTCAACATTGCEST: gi|18336162|gb|BJ168184.1|BJ168184
genomic: ACTGGAGGTGAGGTGTCTTCAATTTTGGAAGCCAGCAAAAGTCCCAACAGgtgtgaatac ... gtgttactagACGAAATGCAACCCCACCGTCGAGACTTTCAAGTCAGCTGGTCAACATTGC
EST: ACTGGAGGTGAGGTGTCTTCAATTTTGGAAGCCAGCAAAAGTCCCAACAG ACGAAATGCAACCCCACCGTCGAGACTTTCAAGTCAGCTGGTCAACATTGCEST: gi|37831961|gb|BJ589973.1|BJ589973
genomic: ACTGGAGGTGAGGTGTCTTCAATTTTGGAAGCCAGCAAAAGTCCCAACAGgtgtgaatac ... gtgttactagACGAAATGCAACCCCACCGTCGAGACTTTCAAGTCAGCTGGTCAACATTGC
EST: ACTGGAGGTGAGGTGTCTTCAATTTTGGAAGCCAGCAAAAGTCCCAACAG ACGAAATGCAACCCCACCGTCGAGACTTTCAAGTCAGCTGGTCAACATTGCEST: gi|7648336|gb|AW739319.1|AW739319
genomic: ACTGGAGGTGAGGTGTCTTCAATTTTGGAAGCCAGCAAAAGTCCCAACAGgtgtgaatac ... gtgttactagACGAAATGCAACCCCACCGTCGAGACTTTCAAGTCAGCTGGTCAACATTGC
EST: ACTGGAGGTGAGGTGTCTTCAATTTTGGAAGCCAGCAAAAGTCCCAACAG ACGAAATGCAACCCCACCGTCGAGACTTTCAAGTCAGCTGGTCAACATTGC
genomic: ACTGGAGGTGAGGTGTCTTCAATTTTGGAAGCCAGCAAAAGTCCCAACAGgtgtgaatac ... gtgttactagACGAAATGCAACCCCACCGTCGAGACTTTCAAGTCAGCTGGTCAACATTGC
ctattatgtttatttgcggttacggtaatcgttgatcccacatgtgtgttactagACGAAATGCAACCCCACCGTCGAGACTTTCAAGTCAGCTGGTCAACATTGCTCGAGGCTGTTGCGACAACCGACGAG
cgttgat putative branch site (score: 3)
atgtttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgaatactctggtcaaacgcttcaacgtcagtggacctttcgtgacacttgttgaaagttaacaaggcatggatagtccactagctttctttaaactattatgtttatttgcggttacggtaatcgttgatcccacatgtgtgttactagACGAAATGCAACCCCACCGTCGAGACTTTCAAGTCAGCTGGTCAACATTGCTCGAGGCTGTTGCGACAACCGACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT