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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taatatggtcttactcacacttccattttcttcatattcctgctccaattttttttttatatatatatattaatgcattttatcaatgattttcaaccagTTGATCTATCGACCTGACTCTGGCGAGATTCTGGGTGTTCACATTCTTGGCCTCCACGCCGCCGACCTCATCCACGAAGCCTCCAACGCTATTGCTATGG

Basic information

species Physcomitrella patens
transcript PP1S112_186V6.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208366234|gb|DC943808.1|DC943808
EST:     AAGCCAACACTAAGGCTCTCGCTGAGAATGAAGGCGATGGGCTGGCTAAG                         TTGATCTATCGACCTGACTCTGGCGAGATTCTGGGTGTTCACATTCTTGGC
genomic: AAGCCAACACTAAGGCTCTCGCTGAGAATGAAGGCGATGGGCTGGCTAAGgtaccggctg ... tttcaaccagTTGATCTATCGACCTGACTCTGGCGAGATTCTGGGTGTTCACATTCTTGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattttttttttatatatatatattaatgcattttatcaatgattttcaaccagTTGATCTATCGACCTGACTCTGGCGAGATTCTGGGTGTTCACATTCTTGGCCTCCACGCCGCCGACCTCATCCACGAAGCCTCCAACGCTATTGCTATGG
                      tattaat  putative branch site (score: 2)
                                            ttttc  putative PPT
     ttttttttatatatat  TA-rich tract