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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagacacaatttgtaagctgcatagagctgtgaggcactgttatttctgtgtattatgggcatttttctcttctttcagtacagagaaggatattgagatgctcactagtattgatttgaattgtggcattgaagtacccattgaaggtttttaatttaattttttttttttgcgagcagGATGTGTTAGAAGGTATTGAATTTGCAAGAGGGCCTGTTAACTCAACTTGGGGTGCAGTGCGAGCACAAATGGGACATCCTGATCCTTTTCCTCTTCTCT

Basic information

species Physcomitrella patens
transcript PP1S106_48V6.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162196168|gb|FC374328.1|FC374328
EST:     TCAGTCATTGGGAATCAGTGCCAACGGCTGAGATCGGACCCTGGGTTCAG                         GATGTGTTAGAAGGTATTGAATTTGCAAGAGGGCCTGTTAACTCAACTTGG
genomic: TCAGTCATTGGGAATCAGTGCCAACGGCTGAGATCGGACCCTGGGTTCAGgtagacacaa ... ttgcgagcagGATGTGTTAGAAGGTATTGAATTTGCAAGAGGGCCTGTTAACTCAACTTGG
EST: gi|162248175|gb|FC420856.1|FC420856
EST:     TCAGTCATTGGGAATCAGTGCCAACGGCTGAGATCGGACCCTGGGTTCAG                         GATGTGTTAGAAGGTATTGAATTTGCAAGAGGGCCTGTTAACTCAACTTGG
genomic: TCAGTCATTGGGAATCAGTGCCAACGGCTGAGATCGGACCCTGGGTTCAGgtagacacaa ... ttgcgagcagGATGTGTTAGAAGGTATTGAATTTGCAAGAGGGCCTGTTAACTCAACTTGG
EST: gi|100445951|gb|CJ970250.1|CJ970250
EST:     TCAGTCATTGGGAATCAGTGCCAACGGCTGAGATCGGACCCTGGGTTCAG                         GATGTGTTAGAAGGTATTGAATTTGCAAGAGGGCCTGTTAACTCAACTTGG
genomic: TCAGTCATTGGGAATCAGTGCCAACGGCTGAGATCGGACCCTGGGTTCAGgtagacacaa ... ttgcgagcagGATGTGTTAGAAGGTATTGAATTTGCAAGAGGGCCTGTTAACTCAACTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcattgaagtacccattgaaggtttttaatttaattttttttttttgcgagcagGATGTGTTAGAAGGTATTGAATTTGCAAGAGGGCCTGTTAACTCAACTTGGGGTGCAGTGCGAGCACAAATGGGACATCCTGATCCTTTTCCTCTTCTCT
                              tttaattttttttttt  CT-rich tract
               attgaaggtttttaat  TA-rich tract