1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtatgacaaatttatgctcctgcaaccagggttcaatcactgcattagctgggaagcaaaggttttcaagattggatttatgcataagtatgtaggaattgcaaccggtgggggcctgtggtaatcgaaatcctcattgtttgtgaattcagGTGGATATTGCAATCCCAGAAGTATTTGTAGGAGGCTTGTTGGGGTCTATGCTTATTTATCTGTTCAGTGCCTGGGCATGTGCTGCTGTGGGCCGAACAG
species | Physcomitrella patens |
transcript | PP1S105_42V6.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GTGCTTACATGGACGAAGTGTCTTCATTTTCTGGCGTTGCCTTCACTACG GTGGATATTGCAATCCCAGAAGTATTTGTAGGAGGCTTGTTGGGGTCTATGEST: gi|162185003|gb|FC362449.1|FC362449
genomic: GTGCTTACATGGACGAAGTGTCTTCATTTTCTGGCGTTGCCTTCACTACGgtatgacaaa ... gtgaattcagGTGGATATTGCAATCCCAGAAGTATTTGTAGGAGGCTTGTTGGGGTCTATG
EST: GTGCTTACATGGACGAAGTGTCTTCATTTTCTGGCGTTGCCTTCACTACG GTGGATATTGCAATCCCAGAAGTATTTGTAGGAGGCTTGTTGGGGTCTATG
genomic: GTGCTTACATGGACGAAGTGTCTTCATTTTCTGGCGTTGCCTTCACTACGgtatgacaaa ... gtgaattcagGTGGATATTGCAATCCCAGAAGTATTTGTAGGAGGCTTGTTGGGGTCTATG
attgcaaccggtgggggcctgtggtaatcgaaatcctcattgtttgtgaattcagGTGGATATTGCAATCCCAGAAGTATTTGTAGGAGGCTTGTTGGGGTCTATGCTTATTTATCTGTTCAGTGCCTGGGCATGTGCTGCTGTGGGCCGAACAG
attgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgacaaatttatgctcctgcaaccagggttcaatcactgcattagctgggaagcaaaggttttcaagattggatttatgcataagtatgtaggaattgcaaccggtgggggcctgtggtaatcgaaatcctcattgtttgtgaattcagGTGGATATTGCAATCCCAGAAGTATTTGTAGGAGGCTTGTTGGGGTCTATGCTTATTTATCTGTTCAGTGCCTGGGCATGTGCTGCTGTGGGCCGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT