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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtggaatgattttcaagttcactaatgccacattcgaattcttgaatcctaatgatactgtgctcttggaggagcctctacgggtgcttttttattcagtttctgatttgtcctttacctgtgaattgctgattgatagtattgtgtgttttcagAAAGTGTTCGAGGACTATGAACGCGACAGCTACGTAAAGCTTATTGCTGACATCGAAAAGTTAGATGATCAAGCCTTGCAA

Basic information

species Physcomitrella patens
transcript PP1S101_225V6.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162152921|gb|FC329223.1|FC329223
EST:     CAGCGTGCGTAGTTGAAGTAAAGCGCGTTTACAATGAACTTGAACTCCAG                         AAAGTGTTCGAGGACTATGAACGCGACAGCTACGTAAAGCTTATTGCTGAC
genomic: CAGCGTGCGTAGTTGAAGTAAAGCGCGTTTACAATGAACTTGAACTCCAGgtgagtggaa ... gtgttttcagAAAGTGTTCGAGGACTATGAACGCGACAGCTACGTAAAGCTTATTGCTGAC
EST: gi|67579318|gb|BJ951449.1|BJ951449
EST:     CAGCGTGCGTAGTTGAAGTAAAGCGCGTTTACAATGAACTTGAACTCCAG                         AAAGTGTTCGAGGACTATGAACGCGACAGCTACGTAAAGCTTATTGCTGAC
genomic: CAGCGTGCGTAGTTGAAGTAAAGCGCGTTTACAATGAACTTGAACTCCAGgtgagtggaa ... gtgttttcagAAAGTGTTCGAGGACTATGAACGCGACAGCTACGTAAAGCTTATTGCTGAC
EST: gi|208378429|gb|DC923065.1|DC923065
EST:     CAGCGTGCGTAGTTGAAGTAAAGCGCGTTTACAATGAACTTGAACTCCAG                         AAAGTGTTCGAGGACTATGAACGCGACAGCTACGTAAAGCTTATTGCTGAC
genomic: CAGCGTGCGTAGTTGAAGTAAAGCGCGTTTACAATGAACTTGAACTCCAGgtgagtggaa ... gtgttttcagAAAGTGTTCGAGGACTATGAACGCGACAGCTACGTAAAGCTTATTGCTGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgatttgtcctttacctgtgaattgctgattgatagtattgtgtgttttcagAAAGTGTTCGAGGACTATGAACGCGACAGCTACGTAAAGCTTATTGCTGACATCGAAAAGTTAGATGATCAAGCCTTGCAA
                                              tgttttc  CT-rich tract
                                   atagtatt  TA-rich tract