1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttctattgacagactacgcagaagtacactaaaaaggaccctgctggttggcttttatgccgtttgtttcttgtgtctgatgtaaagtttctttctacagATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAACCTGATGATGGGCTGCCCGGAGGAAGCTGGCCTTCTTCAGCAACCGATGT
species | Physcomitrella patens |
transcript | PP1S101_184V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGAATGTTTTTGAGGATCGGATTCCTGGAAGAGCAATCATCATCTCTGTG ATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAACEST: gi|37832029|gb|BJ590041.1|BJ590041
genomic: TGAATGTTTTTGAGGATCGGATTCCTGGAAGAGCAATCATCATCTCTGTGgtaagctctc ... ctttctacagATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAAC
EST: TGAATGTTTTTGAGGATCGGATTCCTGGAAGAGCAATCATCATCTCTGTG ATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAACEST: gi|162233493|gb|FC409952.1|FC409952
genomic: TGAATGTTTTTGAGGATCGGATTCCTGGAAGAGCAATCATCATCTCTGTGgtaagctctc ... ctttctacagATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAAC
EST: TGAATGTTTTTGAGGATCGGATTCCTGGAAGAGCAATCATCATCTCTGTG ATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAACEST: gi|162234960|gb|FC411747.1|FC411747
genomic: TGAATGTTTTTGAGGATCGGATTCCTGGAAGAGCAATCATCATCTCTGTGgtaagctctc ... ctttctacagATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAAC
EST: TGAATGTTTTTGAGGATCGGATTCCTGGAAGAGCAATCATCATCTCTGTG ATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAACEST: gi|162226448|gb|FC403546.1|FC403546
genomic: TGAATGTTTTTGAGGATCGGATTCCTGGAAGAGCAATCATCATCTCTGTGgtaagctctc ... ctttctacagATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAAC
EST: TGAATGTTTTTGAGGATCGGATTCCTGGAAGAGCAATCATCATCTCTGTG ATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAACEST: gi|162233492|gb|FC409951.1|FC409951
genomic: TGAATGTTTTTGAGGATCGGATTCCTGGAAGAGCAATCATCATCTCTGTGgtaagctctc ... ctttctacagATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAAC
EST: TGAATGTTTTTGAGGATCGGATTCCTGGAAGAGCAATCATCATCTCTGTG ATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAACEST: gi|162252980|gb|FC429041.1|FC429041
genomic: TGAATGTTTTTGAGGATCGGATTCCTGGAAGAGCAATCATCATCTCTGTGgtaagctctc ... ctttctacagATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAAC
EST: TGAATGTTTTTGAGGATCGGATTCCTGGAAGAGCAATCATCATCTCTGTG ATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAACEST: gi|162261823|gb|FC438347.1|FC438347
genomic: TGAATGTTTTTGAGGATCGGATTCCTGGAAGAGCAATCATCATCTCTGTGgtaagctctc ... ctttctacagATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAAC
EST: TGAATGTTTTTGAGGATCGGATTCCTGGAAGAGCAATCATCATCTCTGTG ATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAACEST: gi|162165365|gb|FC340840.1|FC340840
genomic: TGAATGTTTTTGAGGATCGGATTCCTGGAAGAGCAATCATCATCTCTGTGgtaagctctc ... ctttctacagATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAAC
EST: TGAATGTTTTTGAGGATCGGATTCCTGGAAGAGCAATCATCATCTCTGTG ATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAACEST: gi|67691610|gb|BJ951843.1|BJ951843
genomic: TGAATGTTTTTGAGGATCGGATTCCTGGAAGAGCAATCATCATCTCTGTGgtaagctctc ... ctttctacagATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAAC
EST: TGAATGTTTTTGAGGATCGGATTCCTGGAAGAGCAATCATCATCTCTGTG ATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAACEST: gi|162265710|gb|FC443116.1|FC443116
genomic: TGAATGTTTTTGAGGATCGGATTCCTGGAAGAGCAATCATCATCTCTGTGgtaagctctc ... ctttctacagATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAAC
EST: TGAATGTTTTTGAGGATCGGATTCCTGGAAGAGCAATCATCATCTCTGTG ATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAAC
genomic: TGAATGTTTTTGAGGATCGGATTCCTGGAAGAGCAATCATCATCTCTGTGgtaagctctc ... ctttctacagATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAAC
ggttggcttttatgccgtttgtttcttgtgtctgatgtaaagtttctttctacagATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAACCTGATGATGGGCTGCCCGGAGGAAGCTGGCCTTCTTCAGCAACCGATGT
gtctgat putative branch site (score: 13)
tttctttctac putative PPT
taaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctattgacagactacgcagaagtacactaaaaaggaccctgctggttggcttttatgccgtttgtttcttgtgtctgatgtaaagtttctttctacagATCGACAATCTTGTCAAGGGTGCATCAGGCCAAGCCCTACAGAACTTGAACCTGATGATGGGCTGCCCGGAGGAAGCTGGCCTTCTTCAGCAACCGATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG