1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gtaaaacatggaatatacttgtaaatctttttgagaacgatcctccacaatatcatgaagacattcccctaattgtgtatttatctgaatctccttttagGTATTGTTGCTCGAGATGGTTTCCATGGTTTGTACCGCGGTTTTGTTCCGAACGTGCTGAAAAACCTCCCAAACAGCAG
species | Physcomitrella patens |
transcript | PP1S91_149V6.4 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AATGCAAATGAAGGGCTCACCGTTCAACTCTTTTCTTGATGCTATTCCAG GTATTGTTGCTCGAGATGGTTTCCATGGTTTGTACCGCGGTTTTGTTCCGAEST: gi|162152927|gb|FC329229.1|FC329229
genomic: AATGCAAATGAAGGGCTCACCGTTCAACTCTTTTCTTGATGCTATTCCAGgtgcgtcatt ... ctccttttagGTATTGTTGCTCGAGATGGTTTCCATGGTTTGTACCGCGGTTTTGTTCCGA
EST: AATGCAAATGAAGGGCTCACCGTTCAACTCTTTTCTTGATGCTATTCCAG GTATTGTTGCTCGAGATGGTTTCCATGGTTTGTACCGCGGTTTTGTTCCGAEST: gi|67578907|gb|BJ951074.1|BJ951074
genomic: AATGCAAATGAAGGGCTCACCGTTCAACTCTTTTCTTGATGCTATTCCAGgtgcgtcatt ... ctccttttagGTATTGTTGCTCGAGATGGTTTCCATGGTTTGTACCGCGGTTTTGTTCCGA
EST: AATGC-AATGAA-GGCTCACCGTTCAACTCTTTTCTTGATGCTATTCCAG GTATTGTTGCTCGAGATGGTTTCCATGGTTTGTACCGCGGTTTTGTTCCGAEST: gi|18333443|gb|BJ165458.1|BJ165458
genomic: AATGCAAATGAAGGGCTCACCGTTCAACTCTTTTCTTGATGCTATTCCAGgtgcgtcatt ... ctccttttagGTATTGTTGCTCGAGATGGTTTCCATGGTTTGTACCGCGGTTTTGTTCCGA
EST: AATGCAAATGAAGGGCTCACCGTTCAACTCTTTTCTTGATGCTATTCCAG GTATTGTTGCTCGAGATGGTTTCCATGGTTTGTACCGCGGTTTTGTTCCGA
genomic: AATGCAAATGAAGGGCTCACCGTTCAACTCTTTTCTTGATGCTATTCCAGgtgcgtcatt ... ctccttttagGTATTGTTGCTCGAGATGGTTTCCATGGTTTGTACCGCGGTTTTGTTCCGA
cacaatatcatgaagacattcccctaattgtgtatttatctgaatctccttttagGTATTGTTGCTCGAGATGGTTTCCATGGTTTGTACCGCGGTTTTGTTCCGAACGTGCTGAAAAACCTCCCAAACAGCAG
ccctaat putative branch site (score: 3)
tctcctttt putative PPT
taattgtgtatttat TA-rich tract