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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtaaaacatggaatatacttgtaaatctttttgagaacgatcctccacaatatcatgaagacattcccctaattgtgtatttatctgaatctccttttagGTATTGTTGCTCGAGATGGTTTCCATGGTTTGTACCGCGGTTTTGTTCCGAACGTGCTGAAAAACCTCCCAAACAGCAG

Basic information

species Physcomitrella patens
transcript PP1S91_149V6.4
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162158484|gb|FC334487.1|FC334487
EST:     AATGCAAATGAAGGGCTCACCGTTCAACTCTTTTCTTGATGCTATTCCAG                         GTATTGTTGCTCGAGATGGTTTCCATGGTTTGTACCGCGGTTTTGTTCCGA
genomic: AATGCAAATGAAGGGCTCACCGTTCAACTCTTTTCTTGATGCTATTCCAGgtgcgtcatt ... ctccttttagGTATTGTTGCTCGAGATGGTTTCCATGGTTTGTACCGCGGTTTTGTTCCGA
EST: gi|162152927|gb|FC329229.1|FC329229
EST:     AATGCAAATGAAGGGCTCACCGTTCAACTCTTTTCTTGATGCTATTCCAG                         GTATTGTTGCTCGAGATGGTTTCCATGGTTTGTACCGCGGTTTTGTTCCGA
genomic: AATGCAAATGAAGGGCTCACCGTTCAACTCTTTTCTTGATGCTATTCCAGgtgcgtcatt ... ctccttttagGTATTGTTGCTCGAGATGGTTTCCATGGTTTGTACCGCGGTTTTGTTCCGA
EST: gi|67578907|gb|BJ951074.1|BJ951074
EST:     AATGC-AATGAA-GGCTCACCGTTCAACTCTTTTCTTGATGCTATTCCAG                         GTATTGTTGCTCGAGATGGTTTCCATGGTTTGTACCGCGGTTTTGTTCCGA
genomic: AATGCAAATGAAGGGCTCACCGTTCAACTCTTTTCTTGATGCTATTCCAGgtgcgtcatt ... ctccttttagGTATTGTTGCTCGAGATGGTTTCCATGGTTTGTACCGCGGTTTTGTTCCGA
EST: gi|18333443|gb|BJ165458.1|BJ165458
EST:     AATGCAAATGAAGGGCTCACCGTTCAACTCTTTTCTTGATGCTATTCCAG                         GTATTGTTGCTCGAGATGGTTTCCATGGTTTGTACCGCGGTTTTGTTCCGA
genomic: AATGCAAATGAAGGGCTCACCGTTCAACTCTTTTCTTGATGCTATTCCAGgtgcgtcatt ... ctccttttagGTATTGTTGCTCGAGATGGTTTCCATGGTTTGTACCGCGGTTTTGTTCCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacaatatcatgaagacattcccctaattgtgtatttatctgaatctccttttagGTATTGTTGCTCGAGATGGTTTCCATGGTTTGTACCGCGGTTTTGTTCCGAACGTGCTGAAAAACCTCCCAAACAGCAG
                     ccctaat  putative branch site (score: 3)
                                            tctcctttt  putative PPT
                        taattgtgtatttat  TA-rich tract