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gtagattatccttcaccttcattatgctaaaccctgtattatcgttacaccacacattttagcattttgataggcgtctctaattttcgccagcgtccgctctcaactttatggtgcatatctctctgactatgcatggtttggcatttgacagGTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGCGGAGAGAAGTTTGCATCGTTGGGCCCACGAAGATGTGCAAAGGATTCAT
species | Physcomitrella patens |
transcript | PP1S90_13V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTG GTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGCEST: gi|208396230|gb|DC924024.1|DC924024
genomic: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTGgtagattatc ... catttgacagGTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGC
EST: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTG GTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGCEST: gi|162199310|gb|FC375146.1|FC375146
genomic: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTGgtagattatc ... catttgacagGTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGC
EST: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTG GTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGCEST: gi|162240427|gb|FC419321.1|FC419321
genomic: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTGgtagattatc ... catttgacagGTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGC
EST: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTG GTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGCEST: gi|162274410|gb|FC450645.1|FC450645
genomic: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTGgtagattatc ... catttgacagGTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGC
EST: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTG GTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGCEST: gi|37836442|gb|BJ594450.1|BJ594450
genomic: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTGgtagattatc ... catttgacagGTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGC
EST: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTG GTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGCEST: gi|22132775|gb|BQ827349.1|BQ827349
genomic: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTGgtagattatc ... catttgacagGTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGC
EST: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTG GTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGCEST: gi|162190182|gb|FC365924.1|FC365924
genomic: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTGgtagattatc ... catttgacagGTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGC
EST: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTG GTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAEST: gi|162190181|gb|FC365923.1|FC365923
genomic: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTGgtagattatc ... catttgacagGTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTA
EST: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTG GTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGCEST: gi|162162473|gb|FC339204.1|FC339204
genomic: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTGgtagattatc ... catttgacagGTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGC
EST: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTG GTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGCEST: gi|162162472|gb|FC339203.1|FC339203
genomic: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTGgtagattatc ... catttgacagGTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGC
EST: GGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTG GTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGCEST: gi|208367676|gb|DC947368.1|DC947368
genomic: GGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTGgtagattatc ... catttgacagGTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGC
EST: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTG GTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGCEST: gi|162240428|gb|FC419322.1|FC419322
genomic: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTGgtagattatc ... catttgacagGTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGC
EST: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTG GTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGCEST: gi|162186442|gb|FC362998.1|FC362998
genomic: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTGgtagattatc ... catttgacagGTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGC
EST: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTG GTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGC
genomic: CTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTGgtagattatc ... catttgacagGTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGC
ctctcaactttatggtgcatatctctctgactatgcatggtttggcatttgacagGTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGCGGAGAGAAGTTTGCATCGTTGGGCCCACGAAGATGTGCAAAGGATTCAT
ctctgac putative branch site (score: 42)
aactttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagattatccttcaccttcattatgctaaaccctgtattatcgttacaccacacattttagcattttgataggcgtctctaattttcgccagcgtccgctctcaactttatggtgcatatctctctgactatgcatggtttggcatttgacagGTCATTGGTGGACAACGTTCCAGAGGGGGTTCACATAGACTTTTTAAGAGCGGAGAGAAGTTTGCATCGTTGGGCCCACGAAGATGTGCAAAGGATTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG