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gtatgttgcttaatcttttgggggtatatttaaacttactttgccctttgtttaccttataacataccttgtgcttttggaattctcatctgacataacctcaacgttgtttttgccccaccagTTGTCCTGAGTTGGAGAGCTTAGTGGGTCTTTGCCGACGTAACGGTGCAATAGGAGCAAGGTTGACTGGAGCTGGTTGGGGTGGTTGTGTTGTTGCTCTG
species | Physcomitrella patens |
transcript | PP1S89_154V6.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAGCTCATGAACGAGAGCCATGCGAGCTGCAGCCTTCTGTACGAATGCAG TTGTCCTGAGTTGGAGAGCTTAGTGGGTCTTTGCCGACGTAACGGTGCAATEST: gi|208388403|gb|DC957041.1|DC957041
genomic: GAGCTCATGAACGAGAGCCATGCGAGCTGCAGCCTTCTGTACGAATGCAGgtatgttgct ... gccccaccagTTGTCCTGAGTTGGAGAGCTTAGTGGGTCTTTGCCGACGTAACGGTGCAAT
EST: GAGCTCATGAACGAGAGCCATGCGAGCTGCAGCCTTCTGTACGAATGCAG TTGTCCTGAGTTGGAGAGCTTAGTGGGTCTTTGCCGACGTAACGGTGCAATEST: gi|162195375|gb|FC369310.1|FC369310
genomic: GAGCTCATGAACGAGAGCCATGCGAGCTGCAGCCTTCTGTACGAATGCAGgtatgttgct ... gccccaccagTTGTCCTGAGTTGGAGAGCTTAGTGGGTCTTTGCCGACGTAACGGTGCAAT
EST: GCCATGCGAGCTGCAGCCTTCTGTACGAATGCAG TTGTCCTGAGTTGGAGAGCTTAGTGGGTCTTTGCCGACGTAACGGTGCAATEST: gi|162272814|gb|FC448802.1|FC448802
genomic: GCCATGCGAGCTGCAGCCTTCTGTACGAATGCAGgtatgttgct ... gccccaccagTTGTCCTGAGTTGGAGAGCTTAGTGGGTCTTTGCCGACGTAACGGTGCAAT
EST: GAGCTCATGAACGAGAGCCATGCGAGCTGCAGCCTTCTGTACGAATGCAG TTGTCCTGAGTTGGAGAGCTTAGTGGGTCTTTGCCGACGTAACGGTGCAATEST: gi|208385544|gb|DC956700.1|DC956700
genomic: GAGCTCATGAACGAGAGCCATGCGAGCTGCAGCCTTCTGTACGAATGCAGgtatgttgct ... gccccaccagTTGTCCTGAGTTGGAGAGCTTAGTGGGTCTTTGCCGACGTAACGGTGCAAT
EST: GAGCTCATGAACGAGAGCCATGCGAGCTGCAGCCTTCTGTACGAATGCAG TTGTCCTGAGTTGGAGAGCTTAGTGGGTCTTTGCCGACGTAACGGTGCAATEST: gi|162195376|gb|FC369311.1|FC369311
genomic: GAGCTCATGAACGAGAGCCATGCGAGCTGCAGCCTTCTGTACGAATGCAGgtatgttgct ... gccccaccagTTGTCCTGAGTTGGAGAGCTTAGTGGGTCTTTGCCGACGTAACGGTGCAAT
EST: GCCATGCGAGCTGCAGCCTTCTGTACGAATGCAG TTGTCCTGAGTTGGAGAGCTTAGTGGGTCTTTGCCGACGTAACGGTGCAAT
genomic: GCCATGCGAGCTGCAGCCTTCTGTACGAATGCAGgtatgttgct ... gccccaccagTTGTCCTGAGTTGGAGAGCTTAGTGGGTCTTTGCCGACGTAACGGTGCAAT
tgtgcttttggaattctcatctgacataacctcaacgttgtttttgccccaccagTTGTCCTGAGTTGGAGAGCTTAGTGGGTCTTTGCCGACGTAACGGTGCAATAGGAGCAAGGTTGACTGGAGCTGGTTGGGGTGGTTGTGTTGTTGCTCTG
acataac putative branch site (score: 3)
tttttgcccc putative PPT
ttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttgcttaatcttttgggggtatatttaaacttactttgccctttgtttaccttataacataccttgtgcttttggaattctcatctgacataacctcaacgttgtttttgccccaccagTTGTCCTGAGTTGGAGAGCTTAGTGGGTCTTTGCCGACGTAACGGTGCAATAGGAGCAAGGTTGACTGGAGCTGGTTGGGGTGGTTGTGTTGTTGCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT