1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagtgttacttttagactgtttctctcatgtcagctgaaagcaagtatgtagtgactgctgtcatttccaacataaagttaatgcaagaaagcaattctggcgtgaggaggattgggatctaacattttcttttgatcagGCCGCGAGAGCCCAGTAAAACCCGCTCAATGAGCAGAGACAGGGAGAAGGAAAGAGATGCCGATCGTGAGCGAGCTGATCGAGAAAAGGAAAAAGAAGCA
species | Physcomitrella patens |
transcript | PP1S88_36V6.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGAGCGAGCTGTCAGGAAAGCGGAGCCGCTAGACAATGAAAA GCCGCGAGAGCCCAGTAAAACCCGCTCAATGAGCAGAGACAGGGAGAAGGAEST: gi|208356042|gb|DC957286.1|DC957286
genomic: TGAGCGAGCTGTCAGGAAAGCGGAGCCGCTAGACAATGAAAAgtaagtgtta ... ttttgatcagGCCGCGAGAGCCCAGTAAAACCCGCTCAATGAGCAGAGACAGGGAGAAGGA
EST: GCTGAGCGAGCTGTCAGGAAAGCGGAGCCGCTAGACAATGAAAA GCCGCGAGAGCCCAGTAAAACCCGCTCAATGAGCAGAGACAGGGAGAAGGAEST: gi|162235734|gb|FC411037.1|FC411037
genomic: GCTGAGCGAGCTGTCAGGAAAGCGGAGCCGCTAGACAATGAAAAgtaagtgtta ... ttttgatcagGCCGCGAGAGCCCAGTAAAACCCGCTCAATGAGCAGAGACAGGGAGAAGGA
EST: TGAGCGAGCTGTCAGGAAAGCGGAGCCGCTAGACAATGAAAA GCCGCGAGAGCCCAGTAAAACCCGCTCAATGAGCAGAGACAGGGAGAAGGAEST: gi|162204260|gb|FC379733.1|FC379733
genomic: TGAGCGAGCTGTCAGGAAAGCGGAGCCGCTAGACAATGAAAAgtaagtgtta ... ttttgatcagGCCGCGAGAGCCCAGTAAAACCCGCTCAATGAGCAGAGACAGGGAGAAGGA
EST: GCTGAGCGAGCTGTCAGGAAAGCGGAGCCGCTAGACAATGAAAA GCCGCGAGAGCCCAGTAAAACCCGCTCAATGAGCAGAGACAGGGAGAAGGA
genomic: GCTGAGCGAGCTGTCAGGAAAGCGGAGCCGCTAGACAATGAAAAgtaagtgtta ... ttttgatcagGCCGCGAGAGCCCAGTAAAACCCGCTCAATGAGCAGAGACAGGGAGAAGGA
aagaaagcaattctggcgtgaggaggattgggatctaacattttcttttgatcagGCCGCGAGAGCCCAGTAAAACCCGCTCAATGAGCAGAGACAGGGAGAAGGAAAGAGATGCCGATCGTGAGCGAGCTGATCGAGAAAAGGAAAAAGAAGCA
atctaac putative branch site (score: 2)
cattttctttt CT-rich tract
taacattttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgttacttttagactgtttctctcatgtcagctgaaagcaagtatgtagtgactgctgtcatttccaacataaagttaatgcaagaaagcaattctggcgtgaggaggattgggatctaacattttcttttgatcagGCCGCGAGAGCCCAGTAAAACCCGCTCAATGAGCAGAGACAGGGAGAAGGAAAGAGATGCCGATCGTGAGCGAGCTGATCGAGAAAAGGAAAAAGAAGCA
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