1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctgtctgcgctgatgtagagttcgcagattcgggttttgaaatgagagggaatggtgttttttttgacgtgctgtgttttggtttgtgtgcgtggggcagAGCTACGATCCAACGACCCACTTTGAGACGACGGTGCAAGACGTGCTTTCGATGTATACAAGGATTACGGGGAAGAATCTGGATCTGAGCGTAGATTTGA
species | Physcomitrella patens |
transcript | PP1S85_191V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGTACGAGCCAGTGAACGATTCGTCGCTGGACAACTGTTTCATTTCAAAG AGCTACGATCCAACGACCCACTTTGAGACGACGGTGCAAGACGTGCTTTCGEST: gi|162209168|gb|FC385387.1|FC385387
genomic: TGTACGAGCCAGTGAACGATTCGTCGCTGGACAACTGTTTCATTTCAAAGgtagtaattt ... cgtggggcagAGCTACGATCCAACGACCCACTTTGAGACGACGGTGCAAGACGTGCTTTCG
EST: TGTACGAGCCAGTGAACGATTCGTCGCTGGACAACTGTTTCATTTCAAAG AGCTACGATCCAACGACCCACTTTGAGACGACGGTGCAAGACGTGCTTTCGEST: gi|67696271|gb|BJ956504.1|BJ956504
genomic: TGTACGAGCCAGTGAACGATTCGTCGCTGGACAACTGTTTCATTTCAAAGgtagtaattt ... cgtggggcagAGCTACGATCCAACGACCCACTTTGAGACGACGGTGCAAGACGTGCTTTCG
EST: TGTACGAGCCAGTGAACGATTCGTCGCTGGACAACTGTTTCATTTCAAAG AGCTACGATCCAACGACCCACTTTGAGACGACGGTGCAAGACGTGCTTTCGEST: gi|162209169|gb|FC385388.1|FC385388
genomic: TGTACGAGCCAGTGAACGATTCGTCGCTGGACAACTGTTTCATTTCAAAGgtagtaattt ... cgtggggcagAGCTACGATCCAACGACCCACTTTGAGACGACGGTGCAAGACGTGCTTTCG
EST: TGTACGAGCCAGTGAACGATTCGTCGCTGGACAACTGTTTCATTTCAAAG AGCTACGATCCAACGACCCACTTTGAGACGACGGTGCAAGACGTGCTTTCGEST: gi|208398358|gb|DC924712.1|DC924712
genomic: TGTACGAGCCAGTGAACGATTCGTCGCTGGACAACTGTTTCATTTCAAAGgtagtaattt ... cgtggggcagAGCTACGATCCAACGACCCACTTTGAGACGACGGTGCAAGACGTGCTTTCG
EST: TGTACGAGCCAGTGAACGATTCGTCGCTGGACAACTGTTTCATTTCAAAG AGCTACGATCCAACGACCCACTTTGAGACGACGGTGCAAGACGTGCTTTCGEST: gi|208372519|gb|DC948745.1|DC948745
genomic: TGTACGAGCCAGTGAACGATTCGTCGCTGGACAACTGTTTCATTTCAAAGgtagtaattt ... cgtggggcagAGCTACGATCCAACGACCCACTTTGAGACGACGGTGCAAGACGTGCTTTCG
EST: TGTACGAGCCAGTGAACGATTCGTCGCTGGACAACTGTTTCATTTCAAAG AGCTACGATCCAACGACCCACTTTGAGACGACGGTGCAAGACGTGCTTTCGEST: gi|208375125|gb|DC956465.1|DC956465
genomic: TGTACGAGCCAGTGAACGATTCGTCGCTGGACAACTGTTTCATTTCAAAGgtagtaattt ... cgtggggcagAGCTACGATCCAACGACCCACTTTGAGACGACGGTGCAAGACGTGCTTTCG
EST: TGTACGAGCCAGTGAACGATTCGTCGCTGGACAACTGTTTCATTTCAAAG AGCTACGATCCAACGACCCACTTTGAGACGACGGTGCAAGACGTGCTTTCG
genomic: TGTACGAGCCAGTGAACGATTCGTCGCTGGACAACTGTTTCATTTCAAAGgtagtaattt ... cgtggggcagAGCTACGATCCAACGACCCACTTTGAGACGACGGTGCAAGACGTGCTTTCG
gagggaatggtgttttttttgacgtgctgtgttttggtttgtgtgcgtggggcagAGCTACGATCCAACGACCCACTTTGAGACGACGGTGCAAGACGTGCTTTCGATGTATACAAGGATTACGGGGAAGAATCTGGATCTGAGCGTAGATTTGA
ttttgac putative branch site (score: 31)
tgtttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtctgcgctgatgtagagttcgcagattcgggttttgaaatgagagggaatggtgttttttttgacgtgctgtgttttggtttgtgtgcgtggggcagAGCTACGATCCAACGACCCACTTTGAGACGACGGTGCAAGACGTGCTTTCGATGTATACAAGGATTACGGGGAAGAATCTGGATCTGAGCGTAGATTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA