1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aacatctacgtgacgttcttgtcatatacttccgtgccagtcattataccctgctgttctggttacatgagttctaaaacttgttggtgcatcttggcagGCAATGTCGAAACCAGCTGCTTGGCATAGATTTGGGTCGCAGAACCCAGACGATAGTGATGACGATAGCTCGCACTTCATAAGTGCAGTGTGTTGGAAGA
species | Physcomitrella patens |
transcript | PP1S81_234V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AATATGTTGCTTGCGGTAGTGAATCGAACGAGGTCTTTGTGTATCATAAG GCAATGTCGAAACCAGCTGCTTGGCATAGATTTGGGTCGCAGAACCCAGACEST: gi|67695047|gb|BJ955280.1|BJ955280
genomic: AATATGTTGCTTGCGGTAGTGAATCGAACGAGGTCTTTGTGTATCATAAGgtattggctg ... atcttggcagGCAATGTCGAAACCAGCTGCTTGGCATAGATTTGGGTCGCAGAACCCAGAC
EST: AATATGTTGCTTGCGGTAGTGAATCGAACGAGGTCTTTGTGTATCATAAG GCAATGTCGAAACCAGCTGCTTGGCATAGATTTGGGTCGCAGAACCCAGACEST: gi|162157819|gb|FC334090.1|FC334090
genomic: AATATGTTGCTTGCGGTAGTGAATCGAACGAGGTCTTTGTGTATCATAAGgtattggctg ... atcttggcagGCAATGTCGAAACCAGCTGCTTGGCATAGATTTGGGTCGCAGAACCCAGAC
EST: AATATGTTGCTTGCGGTAGTGAATCGAACGAGGTCTTTGTGTATCATAAG GCAATGTCGAAACCAGCTGCTTGGCATAGATTTGGGTCGCAGAACCCAGACEST: gi|162189554|gb|FC365776.1|FC365776
genomic: AATATGTTGCTTGCGGTAGTGAATCGAACGAGGTCTTTGTGTATCATAAGgtattggctg ... atcttggcagGCAATGTCGAAACCAGCTGCTTGGCATAGATTTGGGTCGCAGAACCCAGAC
EST: AATATGTTGCTTGCGGTAGTGAATCGAACGAGGTCTTTGTGTATCATAAG GCAATGTCGAAACCAGCTGCTTGGCATAGATTTGGGTCGCAGAACCCAGACEST: gi|67571682|gb|BJ944506.1|BJ944506
genomic: AATATGTTGCTTGCGGTAGTGAATCGAACGAGGTCTTTGTGTATCATAAGgtattggctg ... atcttggcagGCAATGTCGAAACCAGCTGCTTGGCATAGATTTGGGTCGCAGAACCCAGAC
EST: AATATGTTGCTTGCGGTAGTGAATCGAACGAGGTCTTTGTGTATCATAAG GCAATGTCGAAACCAGCTGCTTGGCATAGA
genomic: AATATGTTGCTTGCGGTAGTGAATCGAACGAGGTCTTTGTGTATCATAAGgtattggctg ... atcttggcagGCAATGTCGAAACCAGCTGCTTGGCATAGA
ataccctgctgttctggttacatgagttctaaaacttgttggtgcatcttggcagGCAATGTCGAAACCAGCTGCTTGGCATAGATTTGGGTCGCAGAACCCAGACGATAGTGATGACGATAGCTCGCACTTCATAAGTGCAGTGTGTTGGAAGA
ttctaaa putative branch site (score: 28)
ttctaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacatctacgtgacgttcttgtcatatacttccgtgccagtcattataccctgctgttctggttacatgagttctaaaacttgttggtgcatcttggcagGCAATGTCGAAACCAGCTGCTTGGCATAGATTTGGGTCGCAGAACCCAGACGATAGTGATGACGATAGCTCGCACTTCATAAGTGCAGTGTGTTGGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA