1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagttctttcataacatacatgaaaccacctagcccactagtatgagctatgactagtagtaagtctgtctcgcagagaaaatcaatctaatcaactacaaattttgacgtatctgtgaagcatctatttgtttagaggatcagccctagttctgacctagttctttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTGGAATTGCCAACTTCACTGACGTTGCTGCTACATTCAATGGTATTATTC
species | Physcomitrella patens |
transcript | PP1S7_156V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|67699027|gb|BJ959260.1|BJ959260
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|162274022|gb|FC450369.1|FC450369
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|208374183|gb|DC945229.1|DC945229
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|208371001|gb|DC944376.1|DC944376
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|208362836|gb|DC950636.1|DC950636
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|162223607|gb|FC399419.1|FC399419
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|208384409|gb|DC928160.1|DC928160
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|162270681|gb|FC446294.1|FC446294
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|208369217|gb|DC956050.1|DC956050
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|208367644|gb|DC955003.1|DC955003
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|37846179|gb|BJ604187.1|BJ604187
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|162203672|gb|FC378547.1|FC378547
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|67701044|gb|BJ961277.1|BJ961277
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|208374459|gb|DC948435.1|DC948435
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|208366133|gb|DC955234.1|DC955234
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|162198094|gb|FC372121.1|FC372121
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|67724921|gb|BJ975180.1|BJ975180
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|208379626|gb|DC927123.1|DC927123
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|208386150|gb|DC949061.1|DC949061
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|208364385|gb|DC950686.1|DC950686
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|208390780|gb|DC945853.1|DC945853
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|37851290|gb|BJ609298.1|BJ609298
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|208386182|gb|DC949093.1|DC949093
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|37845304|gb|BJ603312.1|BJ603312
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|208370928|gb|DC944303.1|DC944303
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|162184487|gb|FC359961.1|FC359961
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|18341274|gb|BJ173308.1|BJ173308
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|67725040|gb|BJ975299.1|BJ975299
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|208364465|gb|DC958034.1|DC958034
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|162198093|gb|FC372120.1|FC372120
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|67720385|gb|BJ970644.1|BJ970644
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|208368243|gb|DC951509.1|DC951509
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGANGAAACCCTTCACTTTGCACGTGCCNTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|208354287|gb|DC957465.1|DC957465
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|208360305|gb|DC950250.1|DC950250
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|162169806|gb|FC346162.1|FC346162
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|67691916|gb|BJ952149.1|BJ952149
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTEST: gi|208379943|gb|DC927669.1|DC927669
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
EST: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGAT TGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
genomic: GTGCGCCTAATGAAGAAGAAACCCTTCACTTTGCACGTGCCCTAATTGATgtaagttctt ... tttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGT
agcatctatttgtttagaggatcagccctagttctgacctagttctttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTGGAATTGCCAACTTCACTGACGTTGCTGCTACATTCAATGGTATTATTC
ttctgac putative branch site (score: 2)
ttctttttgtt putative PPT
tatttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttctttcataacatacatgaaaccacctagcccactagtatgagctatgactagtagtaagtctgtctcgcagagaaaatcaatctaatcaactacaaattttgacgtatctgtgaagcatctatttgtttagaggatcagccctagttctgacctagttctttttgttagTGTTGCACTGCAAATCCTGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTGGAATTGCCAACTTCACTGACGTTGCTGCTACATTCAATGGTATTATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT