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gttagaactaagccgttaatcatgttcagtctgtgctgccaaagaatttgtggttagattctttttgtttttctgtgtcatgcttcagctcatgctggtatactaagcatgagacattgaatcctggataacttctatgcagGATATTATGGTGAATGCGGGCGACGGGGGGGCTATATGGAGGTGACTGGTTTGCCTAAAGATGTGAAAGACCAGCTTTACAAGGTTGCTTCTGTGAACTT
species | Physcomitrella patens |
transcript | PP1S7_123V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTTGCAAGACAAGGATTTGAACATTGTTTCGTATCACTCTGTCTCGAAAG GATATTATGGTGAATGCGGGCGACNNNNNNNCTATATGGAGGTGACTGGTTEST: gi|162192249|gb|FC367774.1|FC367774
genomic: TTTGCAAGACAAGGATTTGAACATTGTTTCGTATCACTCTGTCTCGAAAGgttagaacta ... ttctatgcagGATATTATGGTGAATGCGGGCGACGGGGGGGCTATATGGAGGTGACTGGTT
EST: TTTGCAAGACAAGGATTTGAACATTGTTTCGTATCACTCTGTCTCGAAAG GATATTATGGTGAATGCGGGCGACNNNNNNNCTATATGGAGGTGACTGGTTEST: gi|162177329|gb|FC353486.1|FC353486
genomic: TTTGCAAGACAAGGATTTGAACATTGTTTCGTATCACTCTGTCTCGAAAGgttagaacta ... ttctatgcagGATATTATGGTGAATGCGGGCGACGGGGGGGCTATATGGAGGTGACTGGTT
EST: TTTGCAAGACAAGGATTTGAACATTGTTTCGTATCACTCTGTCTCGAAAG GATATTATGGTGAATGCGGGCGACNNNNNNNCTATATGGAGGTGACTGGTTEST: gi|100415274|gb|BY975235.1|BY975235
genomic: TTTGCAAGACAAGGATTTGAACATTGTTTCGTATCACTCTGTCTCGAAAGgttagaacta ... ttctatgcagGATATTATGGTGAATGCGGGCGACGGGGGGGCTATATGGAGGTGACTGGTT
EST: TTTGCAAGACAAGGATTTGAACATTGTTTCGTATCACTCTGTCTCGAAAG GATATTATGGTGAATGCGGGCGACNNNNNNNCTATATGGAGGTGACTGGTT
genomic: TTTGCAAGACAAGGATTTGAACATTGTTTCGTATCACTCTGTCTCGAAAGgttagaacta ... ttctatgcagGATATTATGGTGAATGCGGGCGACGGGGGGGCTATATGGAGGTGACTGGTT
gctcatgctggtatactaagcatgagacattgaatcctggataacttctatgcagGATATTATGGTGAATGCGGGCGACGGGGGGGCTATATGGAGGTGACTGGTTTGCCTAAAGATGTGAAAGACCAGCTTTACAAGGTTGCTTCTGTGAACTT
ggataac putative branch site (score: 3)
cttctat CT-rich tract
tatactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagaactaagccgttaatcatgttcagtctgtgctgccaaagaatttgtggttagattctttttgtttttctgtgtcatgcttcagctcatgctggtatactaagcatgagacattgaatcctggataacttctatgcagGATATTATGGTGAATGCGGGCGACGGGGGGGCTATATGGAGGTGACTGGTTTGCCTAAAGATGTGAAAGACCAGCTTTACAAGGTTGCTTCTGTGAACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG