1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgggggattttggtgatgcgtgggcatagggcaatgtttgatgcgagctgtgcagacgtggtttgtagcgttgtcagttgtgtgtactcgtatgatagaaagtaacgttggcaaggtggtggatttctaatatggttgggtgtggtggtggtgcagAGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATGCTCGGAAGCAAAATCCGATGCTGTCTCTTTGAGGAGTGTCTTGGAAGTT
species | Physcomitrella patens |
transcript | PP1S60_85V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCTGTCGAACGGACGGCCACTTCCGCCTCTGTTCAACTTCAAACCTCAAG AGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATGEST: gi|37843541|gb|BJ601549.1|BJ601549
genomic: CCTGTCGAACGGACGGCCACTTCCGCCTCTGTTCAACTTCAAACCTCAAGgtgggggatt ... ggtggtgcagAGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATG
EST: TCAACTTCAAACCTCCAAG AGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATEST: gi|18334698|gb|BJ166715.1|BJ166715
genomic: TCAACTTCAAACCT-CAAGgtgggggatt ... ggtggtgcagAGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCAT
EST: CCTGTCGAACGGACGGCCACTTCCGCCTCTGTTCAACTTCAAACCTCAAG AGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATGEST: gi|18334689|gb|BJ166706.1|BJ166706
genomic: CCTGTCGAACGGACGGCCACTTCCGCCTCTGTTCAACTTCAAACCTCAAGgtgggggatt ... ggtggtgcagAGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATG
EST: CCTGTCGAACGGACGGCCACTTCCGCCTCTGTTCAACTTCAAACCTCAAG AGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATG
genomic: CCTGTCGAACGGACGGCCACTTCCGCCTCTGTTCAACTTCAAACCTCAAGgtgggggatt ... ggtggtgcagAGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATG
gtaacgttggcaaggtggtggatttctaatatggttgggtgtggtggtggtgcagAGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATGCTCGGAAGCAAAATCCGATGCTGTCTCTTTGAGGAGTGTCTTGGAAGTT
ttctaat putative branch site (score: 22)
atttctaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggggattttggtgatgcgtgggcatagggcaatgtttgatgcgagctgtgcagacgtggtttgtagcgttgtcagttgtgtgtactcgtatgatagaaagtaacgttggcaaggtggtggatttctaatatggttgggtgtggtggtggtgcagAGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATGCTCGGAAGCAAAATCCGATGCTGTCTCTTTGAGGAGTGTCTTGGAAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG