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gtaagcctgaccttcaatcacgtgtgatctcggcactcttccatgatatggttgtcacgtggtggtacagaacactttggggctggacagaagcatctgttttaagctgcgtgaatggtgcgcagGTTGCCTTGATTGGATCGACAGAATCGGGGAAAGGTGACGTATGGGTGCTAGTTGCAGTCCTGGGTGGCATAATTGGATACATTGCAAAGATATATTTCA
species | Physcomitrella patens |
transcript | PP1S60_139V6.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGACACCTATGGACTGGGTGAAACTAACTATATCGGCAGTTCTTGGCCTG GTTGCCTTGATTGGATCGACAGAATCGGGGAAAGGTGACGTATGGGTGCTAEST: gi|37842392|gb|BJ600400.1|BJ600400
genomic: TGACACCTATGGACTGGGTGAAACTAACTATATCGGCAGTTCTTGGCCTGgtaagcctga ... tggtgcgcagGTTGCCTTGATTGGATCGACAGAATCGGGGAAAGGTGACGTATGGGTGCTA
EST: TGGGTGAAACTAACTATATCGGCAGTTCTTGGCCTG GTTGCCTTGATTGGATCGACAGAATCGGGGAAAGGTGACGTATGGGTGCTAEST: gi|162229422|gb|FC404781.1|FC404781
genomic: TGGGTGAAACTAACTATATCGGCAGTTCTTGGCCTGgtaagcctga ... tggtgcgcagGTTGCCTTGATTGGATCGACAGAATCGGGGAAAGGTGACGTATGGGTGCTA
EST: TGACACNTATGGACTGGGTGAAACTAACTATATCGGCAGTTCTTGGCCTG GTTGCCTTGATTGGATCGACAGAATCGGGGAAAGGTGACGTATGGGTGCTA
genomic: TGACACCTATGGACTGGGTGAAACTAACTATATCGGCAGTTCTTGGCCTGgtaagcctga ... tggtgcgcagGTTGCCTTGATTGGATCGACAGAATCGGGGAAAGGTGACGTATGGGTGCTA
aacactttggggctggacagaagcatctgttttaagctgcgtgaatggtgcgcagGTTGCCTTGATTGGATCGACAGAATCGGGGAAAGGTGACGTATGGGTGCTAGTTGCAGTCCTGGGTGGCATAATTGGATACATTGCAAAGATATATTTCA
tgttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcctgaccttcaatcacgtgtgatctcggcactcttccatgatatggttgtcacgtggtggtacagaacactttggggctggacagaagcatctgttttaagctgcgtgaatggtgcgcagGTTGCCTTGATTGGATCGACAGAATCGGGGAAAGGTGACGTATGGGTGCTAGTTGCAGTCCTGGGTGGCATAATTGGATACATTGCAAAGATATATTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG