1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtggggaattttggtgatgcgtgggcatagggcaatgtttgatgcgagctgtgcagacgttgtttgtagcgttgtcagttgtttgtactcgtatgatagaaagtaatgttggcaagatggtggttttttaatatggttgggtgtggtggtggtggtacagAGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATGCTCGGAAGCAAAATCCGATGCTGGCTCTGTGAGGGGTATTTCGGAAGTC
species | Physcomitrella patens |
transcript | PP1S60_100V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCTGCCGAACGGACGGCCACTTCCGCCTCTGTTCAATTTCAAACCTCAAG AGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATGEST: gi|37836905|gb|BJ594913.1|BJ594913
genomic: CCTGCCGAACGGACGGCCACTTCCGCCTCTGTTCAATTTCAAACCTCAAGgtggggaatt ... ggtggtacagAGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATG
EST: CCTGCCGAACGGACGGCCACTTCCGCCTCTGTTCAATTTCAAACCTCAAG AGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATGEST: gi|162249101|gb|FC420378.1|FC420378
genomic: CCTGCCGAACGGACGGCCACTTCCGCCTCTGTTCAATTTCAAACCTCAAGgtggggaatt ... ggtggtacagAGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATG
EST: CCTGCCGAACGGACGGCCACTTCCGCCTCTGTTCAATTTCAAACCTCAAG AGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATGEST: gi|18339293|gb|BJ171320.1|BJ171320
genomic: CCTGCCGAACGGACGGCCACTTCCGCCTCTGTTCAATTTCAAACCTCAAGgtggggaatt ... ggtggtacagAGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATG
EST: CCTGCCGAACGGACGGCCACTTCCGCCTCTGTTCAATTTCAAACCTCAAG AGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATGEST: gi|18333045|gb|BJ165059.1|BJ165059
genomic: CCTGCCGAACGGACGGCCACTTCCGCCTCTGTTCAATTTCAAACCTCAAGgtggggaatt ... ggtggtacagAGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATG
EST: CCTGCCGAACGGACGGCCACTTCCGCCTCTGTTCAATTTCAAACCTCAAG AGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATGEST: gi|162165970|gb|FC341801.1|FC341801
genomic: CCTGCCGAACGGACGGCCACTTCCGCCTCTGTTCAATTTCAAACCTCAAGgtggggaatt ... ggtggtacagAGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATG
EST: CCTGCCGAACGGACGGCCACTTCCGCCTCTGTTCAATTTCAAACCTCAAG AGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATGEST: gi|37837915|gb|BJ595923.1|BJ595923
genomic: CCTGCCGAACGGACGGCCACTTCCGCCTCTGTTCAATTTCAAACCTCAAGgtggggaatt ... ggtggtacagAGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATG
EST: CCTGCCGAACGGACGGCCACTTCCGCCTCTGTTCAATTTCAAACCTCAAG AGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATG
genomic: CCTGCCGAACGGACGGCCACTTCCGCCTCTGTTCAATTTCAAACCTCAAGgtggggaatt ... ggtggtacagAGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATG
atgttggcaagatggtggttttttaatatggttgggtgtggtggtggtggtacagAGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATGCTCGGAAGCAAAATCCGATGCTGGCTCTGTGAGGGGTATTTCGGAAGTC
ttttaat putative branch site (score: 15)
ttttttaatatggtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggggaattttggtgatgcgtgggcatagggcaatgtttgatgcgagctgtgcagacgttgtttgtagcgttgtcagttgtttgtactcgtatgatagaaagtaatgttggcaagatggtggttttttaatatggttgggtgtggtggtggtggtacagAGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATGCTCGGAAGCAAAATCCGATGCTGGCTCTGTGAGGGGTATTTCGGAAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG