1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gagattgcaggtatggaggcattggaattcgttgattacagcaattcttattaagcactatttgaggtttgatgtacgtatggacgctgtgattgtgcagAGTTGAAAGGTGCTACTCCTGAGATTCTGCAACGGTTGATACCTGAGCATGCAAGGAAGCAAAACCCGATGCTCGCGTTGTAAGCGCTGGTTTGGAGGCA
species | Physcomitrella patens |
transcript | PP1S52_55V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTTACCAAATGGGCGGCCACTTCCCCCGTTGTTCAACTTCAAACCTCAAG AGTTGAAAGGTGCTACTCCTGAGATTCTGCAACGGTTGATACCTGAGCATGEST: gi|162199399|gb|FC373740.1|FC373740
genomic: TTTACCAAATGGGCGGCCACTTCCCCCGTTGTTCAACTTCAAACCTCAAGgtgtgacgtt ... gattgtgcagAGTTGAAAGGTGCTACTCCTGAGATTCTGCAACGGTTGATACCTGAGCATG
EST: TTTACCAAATGGGCGGCCACTTCCCCCGTTGTTCAACTTCAAACCTCAAG AGTTGAAAGGTGCTACTCCTGAGATTCTGCAACGGTTGATACCTGAGCATGEST: gi|18335935|gb|BJ167956.1|BJ167956
genomic: TTTACCAAATGGGCGGCCACTTCCCCCGTTGTTCAACTTCAAACCTCAAGgtgtgacgtt ... gattgtgcagAGTTGAAAGGTGCTACTCCTGAGATTCTGCAACGGTTGATACCTGAGCATG
EST: TTTACCAAATGGGCGGCCACTTCCCCCGTTGTTCAACTTCAAACCTCAAG AGTTGAAAGGTGCTACTCCTGAGATTCTGCAACGGTTGATACCTGAGCATGEST: gi|37821762|gb|BJ579828.1|BJ579828
genomic: TTTACCAAATGGGCGGCCACTTCCCCCGTTGTTCAACTTCAAACCTCAAGgtgtgacgtt ... gattgtgcagAGTTGAAAGGTGCTACTCCTGAGATTCTGCAACGGTTGATACCTGAGCATG
EST: TTTACCAAATGGGCGGCCACTTCCCCCGTTGTTCAACTTCAAACCTCAAG AGTTGAAAGGTGCTACTCCTGAGATTCTGCAACGGTTGATACCTGAGCATG
genomic: TTTACCAAATGGGCGGCCACTTCCCCCGTTGTTCAACTTCAAACCTCAAGgtgtgacgtt ... gattgtgcagAGTTGAAAGGTGCTACTCCTGAGATTCTGCAACGGTTGATACCTGAGCATG
tcttattaagcactatttgaggtttgatgtacgtatggacgctgtgattgtgcagAGTTGAAAGGTGCTACTCCTGAGATTCTGCAACGGTTGATACCTGAGCATGCAAGGAAGCAAAACCCGATGCTCGCGTTGTAAGCGCTGGTTTGGAGGCA
gtttgat putative branch site (score: 17)
actattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagattgcaggtatggaggcattggaattcgttgattacagcaattcttattaagcactatttgaggtttgatgtacgtatggacgctgtgattgtgcagAGTTGAAAGGTGCTACTCCTGAGATTCTGCAACGGTTGATACCTGAGCATGCAAGGAAGCAAAACCCGATGCTCGCGTTGTAAGCGCTGGTTTGGAGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG