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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcaatagtaagcataggaaacagtttggtttttatgaaaaggttattgaagccatctgaaagaggttgtactaagctggatgattttgtgggtacttcagGAGAAGGATGAAAATTTATCAGGAGACCACGCTAGGGAAGGTCTGACTTGTGTTGTTTCAGTGAAGGTTCCTAATCCAGAGTTTGAGGGACAAACTAAG

Basic information

species Physcomitrella patens
transcript PP1S517_8V6.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S517_8V6.1 (Physcomitrella patens), 3'ss of exon 11
lower sequence: LOC_Os01g16290.1 (Oryza sativa), 3'ss of exon 11
------gcaatagtaagcataggaaacagtttggtttttatgaaaaggttattgaagccatctgaaagaggttgtactaagctggatgattttgtgggtacttcagGAGAAGGATGAAAATTTATCAGGAGACCACGCTAGGGAAGGTCTGACTTGTGTTGTTTCAGTGAAGGTTCCTAATCCAGAGTTTGAGGGACAAACTAAG
      |||    ||  |||  ||   | |    ||||||   ||  ||  | | |    | | |  | | ||   || | |      || |  ||  |  |  |||| || |||   |  ||    || || || |  || || ||  |||| ||  || || |||||||||| ||||||||||||||||| || ||||| |||
tttttagcatacttattcatctgatcaaatggtatttttaattaactgtattggtaatttttttagtgggatttatcttaac------atataatgctttttatagGATAAAGATATTAGCTTGAGTGGGGAGCATGTAAGAGAGGGAATGACCTGCATTATTGCAGTGAAGGTCCCTAATCCAGAGTTTGAAGGGCAAACAAAG

upper sequence: PP1S517_8V6.1 (Physcomitrella patens), 3'ss of exon 11
lower sequence: GRMZM2G111014_T01 (Zea mays), 3'ss of exon 11
gcaatagtaagcataggaaacagtttggtttttatgaaaaggttattgaagcc-----atctgaaagaggttgtactaagctggatgattttgtgggtactt-cagGAGAAGGATGAAAATTTATCAGGAGACCACGCTAGGGAAGGTCTGACTTGTGTTGTTTCAGTGAAGGTTCCTAATCCAGAGTTTGAGGGACAAACTAAG
       ||||   | |      ||  || |||   |        ||||| ||     |||  |   | |    ||  |  |   |   |  || | |  ||  |||| ||||||   |  ||    || || || |  || |||||  |||| ||  |  ||||||||||||| |||| ||||||||||||||| ||||| |||
-----cataagtgaatgttttgcttaagtctttg-aagtgcacctttgaatcctgtttatccaaccaatgaaaaacataattaactagatcagttgctctttgtagGATAAGGATATTACCTTGAGTGGGGAGCATGTAAGAGAAGGAATGACATGCATCATTTCAGTGAAGGTCCCTAGTCCAGAGTTTGAGGGTCAAACAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaagccatctgaaagaggttgtactaagctggatgattttgtgggtacttcagGAGAAGGATGAAAATTTATCAGGAGACCACGCTAGGGAAGGTCTGACTTGTGTTGTTTCAGTGAAGGTTCCTAATCCAGAGTTTGAGGGACAAACTAAG
                                  atgatttt  TA-rich tract