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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctcatcgtcaaatggttatgttaagctcggctggttctcaagggttgtaatcgtttaatcttactaggtgtttgttgcctttctacgataaccagttttcttggtgtacttacagatcttttgtggttcaaattttgcagTGACGCATCTTTTGGATACCCTGGCGGTCCTATACTGTTCAAGAATTTAAATTTTGGAATTGACCTCGACAGTCGATTAGCAA

Basic information

species Physcomitrella patens
transcript PP1S47_97V6.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S47_97V6.2 (Physcomitrella patens), 3'ss of exon 11
lower sequence: GLYMA13G10530.1 (Glycine max), 3'ss of exon 10
gtaagcctcatcgtcaaatggttatgttaagctcggctggttctcaagggttgtaatcgtttaatcttactaggtgtttgttgcctttctacgataaccag-ttttcttggtgtacttacagatcttttgtggttcaaattttgcagTGACGCATCTTTTGGATACCCTGGCGGTCCTATACTGTTCAAGAATTTAAATTTTGGAATTGACCTCGACAGTCGATTAGCAA
         | | | |     || | || ||||| |  |  |     |  || ||       |    ||| |       |||       |||   |   ||   || |  |||  || |        || |   ||| || | ||||||| ||||| ||||| || ||||| || || || ||||| |||||||| || ||||| ||||| |||||||||||  | ||||
-----gtagaacataaggcccttct-ttcagctctgtggactacattgatttatatgaaccaatgaataccaaaataaagtttgtcacatacagcatttaggccttatctgtgacctaaatcgaaaattttcaatcatatgt-gcagTGATGCATCATTTGGTTATCCTGGGGGCCCCATTCTGTTTAAGAATTTGAACTTTGGGATTGATCTCGACAGTCGTATTGCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgataaccagttttcttggtgtacttacagatcttttgtggttcaaattttgcagTGACGCATCTTTTGGATACCCTGGCGGTCCTATACTGTTCAAGAATTTAAATTTTGGAATTGACCTCGACAGTCGATTAGCAA
                     tacttac  putative branch site (score: 1)
                                         ttcaaatttt  TA-rich tract