1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagtaccatgcactttctgtttttcttttgtaaaaagttttatggctgatttgcgatcaggatcgtgcagataatcgatgtattttaatattatattttgcgttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCCCAGGACGAAACTGTAGCGACCACAAGAGCTCTACATTCCAGCGGTATAA
species | Physcomitrella patens |
transcript | PP1S47_4V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCT CTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCCEST: gi|37837608|gb|BJ595616.1|BJ595616
genomic: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCTgtgagtacca ... ttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
EST: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCT CTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCCEST: gi|162242980|gb|FC417620.1|FC417620
genomic: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCTgtgagtacca ... ttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
EST: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCT CTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCCEST: gi|37833593|gb|BJ591605.1|BJ591605
genomic: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCTgtgagtacca ... ttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
EST: TGATCGGGTTTTAGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCT CTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCCEST: gi|162241570|gb|FC414692.1|FC414692
genomic: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCTgtgagtacca ... ttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
EST: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCT CTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCCEST: gi|208358879|gb|DC957651.1|DC957651
genomic: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCTgtgagtacca ... ttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
EST: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCT CTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCCEST: gi|162241571|gb|FC414693.1|FC414693
genomic: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCTgtgagtacca ... ttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
EST: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCT CTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCCEST: gi|162248337|gb|FC422552.1|FC422552
genomic: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCTgtgagtacca ... ttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
EST: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCT CTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
genomic: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCTgtgagtacca ... ttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
caggatcgtgcagataatcgatgtattttaatattatattttgcgttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCCCAGGACGAAACTGTAGCGACCACAAGAGCTCTACATTCCAGCGGTATAA
ttttaat putative branch site (score: 3)
agataatcgatgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaccatgcactttctgtttttcttttgtaaaaagttttatggctgatttgcgatcaggatcgtgcagataatcgatgtattttaatattatattttgcgttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCCCAGGACGAAACTGTAGCGACCACAAGAGCTCTACATTCCAGCGGTATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT