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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctcgtgtctacaatcatttatcgttattaaaagtgtcaagaatatgtctttagagcgaattatggccgtcacatcgaattgatgttatgtgcacatgattactcacatgattggacttcctaacgatttataaacttttgtctgacctactcccatatgatcttgttcttctgcgcaatgacatttaaagTGGAGTGAAGAGGAGGAGGAAAAGTTCAAGGAGAAGGTGATGCAAGGGTATGATCGAGAAGGACACCCCTATTATGCGAGTGCACGGCTCTGGGACGATG

Basic information

species Physcomitrella patens
transcript PP1S47_126V6.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162179960|gb|FC356031.1|FC356031
EST:     GTGTTCTAGCACAAGTTGAGAGAGACAAGAGAAGGCGCGACAAAACTGAA                         TGGAGTGAAGAGGAGGAGGAAAAGTTCAAGGAGAAGGTGATGCAAGGGTAT
genomic: GTGTTCTAGCACAAGTTGAGAGAGACAAGAGAAGGCGCGACAAAACTGAAgtaagttctc ... acatttaaagTGGAGTGAAGAGGAGGAGGAAAAGTTCAAGGAGAAGGTGATGCAAGGGTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtctgacctactcccatatgatcttgttcttctgcgcaatgacatttaaagTGGAGTGAAGAGGAGGAGGAAAAGTTCAAGGAGAAGGTGATGCAAGGGTATGATCGAGAAGGACACCCCTATTATGCGAGTGCACGGCTCTGGGACGATG
    gtctgac  putative branch site (score: 3)
                                             acatttaaa  TA-rich tract