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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatgatcacaactttgaagaatccatttgatttacctcagtcgagaccatgaggagatgcagtatatgtttccatctaattattttatatctgtacttggttatagAATGACTTGGTACACGGTTGGGGTCTGGATTTCGCCATACGTCGCTGTGTTGAG

Basic information

species Physcomitrella patens
transcript PP1S448_20V6.3
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162277818|gb|FC454281.1|FC454281
EST:     CACCCGTGTTTTCACGAAAAGCATGGCGTTGCGTCTGGTACATAATACAG                         AATGACTTGGTACACGGTTGGGGTCTGGATTTCGCCATACGTCGCTGTGTT
genomic: CACCCGTGTTTTCACGAAAAGCATGGCGTTGCGTCTGGTACATAATACAGgtacatgatc ... ttggttatagAATGACTTGGTACACGGTTGGGGTCTGGATTTCGCCATACGTCGCTGTGTT
EST: gi|37826494|gb|BJ584506.1|BJ584506
EST:     CACCCGTGTTTTCACGAAAAGCATGGCGTTGCGTCTGGTACATAATACAG                         AATGACTTGGTACACGGTTGGGGTCTGGATTTCGCCATACGTCGCTGTGTT
genomic: CACCCGTGTTTTCACGAAAAGCATGGCGTTGCGTCTGGTACATAATACAGgtacatgatc ... ttggttatagAATGACTTGGTACACGGTTGGGGTCTGGATTTCGCCATACGTCGCTGTGTT
EST: gi|162277817|gb|FC454280.1|FC454280
EST:     CACCCGTGTTTTCACGAAAAGCATGGCGTTGCGTCTGGTACATAATACAG                         AATGACTTGGTACACGGTTGGGGTCTGGATTTCGCCATACGTCGCTGTGTT
genomic: CACCCGTGTTTTCACGAAAAGCATGGCGTTGCGTCTGGTACATAATACAGgtacatgatc ... ttggttatagAATGACTTGGTACACGGTTGGGGTCTGGATTTCGCCATACGTCGCTGTGTT
EST: gi|162177785|gb|FC354619.1|FC354619
EST:     CGTTGCGTCTGGTACATAATACAG                         AATGACTTGGTACACGGTTGGGGTCTGGATTTCGCCATACGTCGCTGTGTT
genomic: CGTTGCGTCTGGTACATAATACAGgtacatgatc ... ttggttatagAATGACTTGGTACACGGTTGGGGTCTGGATTTCGCCATACGTCGCTGTGTT
EST: gi|37822473|gb|BJ580539.1|BJ580539
EST:     CACCCGTGTTTTCACGAAAAGCATGGCGTTGCGTCTGGTACATAATACAG                         AATGACTTGGTACACGGTTGGGGTCTGGATTTCGCCATACGTCGCTGTGTT
genomic: CACCCGTGTTTTCACGAAAAGCATGGCGTTGCGTCTGGTACATAATACAGgtacatgatc ... ttggttatagAATGACTTGGTACACGGTTGGGGTCTGGATTTCGCCATACGTCGCTGTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggagatgcagtatatgtttccatctaattattttatatctgtacttggttatagAATGACTTGGTACACGGTTGGGGTCTGGATTTCGCCATACGTCGCTGTGTTGAG
                      atctaat  putative branch site (score: 3)
           tatatgtttccatcta  TA-rich tract