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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttctcctccttgaccattttacatcgtttattgttcttgtattcacgtgtaagaatacacaggtgtgttctatactgctgttctattgtttgacagactgtgaatcgctcgattgtgtggcagAATTTGATTATGCATCATGTGGACCACTCCGGGGGACTTCTTATCGATCTGCTTCAAGGCTTGCTGAAATTTGAACCATCGGAACGGCTTACGGCTAAAG

Basic information

species Physcomitrella patens
transcript PP1S425_6V6.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37834999|gb|BJ593011.1|BJ593011
EST:     CAGTGTCAAGGGAAAGTATTCGAGCCGTGAGAAGATTACCCAGACTACGG                         AATTTGATTATGCATCATGTGGACCACTCCGGGGGACTTCTTATCGATCTG
genomic: CAGTGTCAAGGGAAAGTATTCGAGCCGTGAGAAGATTACCCAGACTACGGgtttgttctc ... tgtgtggcagAATTTGATTATGCATCATGTGGACCACTCCGGGGGACTTCTTATCGATCTG
EST: gi|208396136|gb|DC924602.1|DC924602
EST:     CAGTGTCAAGGGAAAGTATTCGAGCCGTGAGAAGATTACCCAGACTACGG                         AATTTGATTATGCATCATGTGGACCACTCCGGGGGANNTCTTATCGATCTG
genomic: CAGTGTCAAGGGAAAGTATTCGAGCCGTGAGAAGATTACCCAGACTACGGgtttgttctc ... tgtgtggcagAATTTGATTATGCATCATGTGGACCACTCCGGGGGACTTCTTATCGATCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatactgctgttctattgtttgacagactgtgaatcgctcgattgtgtggcagAATTTGATTATGCATCATGTGGACCACTCCGGGGGACTTCTTATCGATCTGCTTCAAGGCTTGCTGAAATTTGAACCATCGGAACGGCTTACGGCTAAAG
                   gtttgac  putative branch site (score: 4)
               tattgttt  TA-rich tract