1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatcgatatgcccttacctcatttttaacggtcatggaagctgaatcatctaagttgcaagtagttttaaaagcgtaaggagttttaagaaaataacgtctacttatggatttgatcatcttacagCTTAGCAGCAGAGCGACACGTGTACACAGAGGAGACGGCACGGTTCATACATGGACATGGTACTGCTTTGAAGAATTGAAGTGACCTTCTGAGGCACGCG
species | Physcomitrella patens |
transcript | PP1S41_50V6.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGGCAAACTCTGTCTGCAGCAATCGCCCTTAATAAGCATGTTCGTAGAAG CTTAGCAGCAGAGCGACACGTGTACACAGAGGAGACGGCACGGTTCATACAEST: gi|37845325|gb|BJ603333.1|BJ603333
genomic: GGGCAAACTCTGTCTGCAGCAATCGCCCTTAATAAGCATGTTCGTAGAAGgtatcgatat ... catcttacagCTTAGCAGCAGAGCGACACGTGTACACAGAGGAGACGGCACGGTTCATACA
EST: GGGCAAACTCTGTCTGCAGCAATCGCCCTTAATAAGCATGTTCGTAGAAG CTTAGCAGCAGAGCGACACGTGTACACAGAGGAGACGGCACGGTTCATACAEST: gi|208388308|gb|DC949308.1|DC949308
genomic: GGGCAAACTCTGTCTGCAGCAATCGCCCTTAATAAGCATGTTCGTAGAAGgtatcgatat ... catcttacagCTTAGCAGCAGAGCGACACGTGTACACAGAGGAGACGGCACGGTTCATACA
EST: GGGCAAACTCTGTCTGCAGCAATCGCCCTTAATAAGCATGTTCGTAGAAG CTTAGCAGCAGAGCGACACGTGTACACAGAGGAGACGGCACGGTTCATACA
genomic: GGGCAAACTCTGTCTGCAGCAATCGCCCTTAATAAGCATGTTCGTAGAAGgtatcgatat ... catcttacagCTTAGCAGCAGAGCGACACGTGTACACAGAGGAGACGGCACGGTTCATACA
agcgtaaggagttttaagaaaataacgtctacttatggatttgatcatcttacagCTTAGCAGCAGAGCGACACGTGTACACAGAGGAGACGGCACGGTTCATACATGGACATGGTACTGCTTTGAAGAATTGAAGTGACCTTCTGAGGCACGCG
tcatctt CT-rich tract
agttttaagaaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcgatatgcccttacctcatttttaacggtcatggaagctgaatcatctaagttgcaagtagttttaaaagcgtaaggagttttaagaaaataacgtctacttatggatttgatcatcttacagCTTAGCAGCAGAGCGACACGTGTACACAGAGGAGACGGCACGGTTCATACATGGACATGGTACTGCTTTGAAGAATTGAAGTGACCTTCTGAGGCACGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG